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AT4G26180 - ( mitochondrial substrate carrier family protein )

13 Proteins interacs with AT4G26180

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G01100	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.3623	Class C: mitochondrion	ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) ADP TRANSMEMBRANE TRANSPORTER/ AMP TRANSMEMBRANE TRANSPORTER/ ATP TRANSMEMBRANE TRANSPORTER/ BINDING
AT4G39460	Predicted Gene fusion method Co-expression	FSW = 0.1667	Class C: mitochondrion	SAMC1 (S-ADENOSYLMETHIONINE CARRIER 1) S-ADENOSYLMETHIONINE TRANSMEMBRANE TRANSPORTER/ BINDING
AT4G28390	Predicted Phylogenetic profile method	FSW = 0.1077	Class C: mitochondrion	AAC3 (ADP/ATP CARRIER 3) ATPADP ANTIPORTER/ BINDING
AT3G55640	Predicted Phylogenetic profile method Co-expression	FSW = 0.5613	Class C: mitochondrion	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT5G61810	Predicted Phylogenetic profile method Co-expression	FSW = 0.5818	Class C: mitochondrion	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT1G14560	Predicted Phylogenetic profile method Co-expression	FSW = 0.6325	Class C: mitochondrion	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT3G20240	Predicted Phylogenetic profile method Co-expression	FSW = 0.2125	Class C: mitochondrion	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT5G48970	Predicted Phylogenetic profile method	FSW = 0.2193	Class C: mitochondrion	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT3G21390	Predicted Phylogenetic profile method	FSW = 0.4831	Class C: mitochondrion	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT2G37890	Predicted Phylogenetic profile method Co-expression	FSW = 0.5870	Class C: mitochondrion	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT3G53940	Predicted Phylogenetic profile method Co-expression	FSW = 0.4045	Class C: mitochondrion	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT5G17400	Predicted Phylogenetic profile method	FSW = 0.2735	Class C: mitochondrion	ER-ANT1 (ENDOPLASMIC RETICULUM-DENINE NUCLEOTIDE TRANSPORTER 1) ATPADP ANTIPORTER/ BINDING
AT5G56450	Predicted Phylogenetic profile method	FSW = 0.2963	Class C: mitochondrion	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT4G26180 - ( mitochondrial substrate carrier family protein )

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

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Fasta sequences:

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FSW

C3

PEP

How to cite