Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G01270 - ( zinc finger (C3HC4-type RING finger) family protein )
16 Proteins interacs with AT4G01270Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G31780 | Predictedtwo hybrid | FSW = 0.0161
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT5G27540 | Predictedtwo hybrid | FSW = 0.1696
| Unknown | MIRO1 (MIRO-RELATED GTP-ASE 1) GTP BINDING |
AT2G40550 | Predictedtwo hybrid | FSW = 0.0936
| Unknown | ETG1 (E2F TARGET GENE 1) |
AT1G71270 | Predictedtwo hybrid | FSW = 0.0476
| Unknown | POK (POKY POLLEN TUBE) |
AT1G71300 | Predictedtwo hybrid | FSW = 0.1125
| Unknown | VPS52/SAC2 FAMILY PROTEIN |
AT3G63150 | Predictedtwo hybrid | FSW = 0.0781
| Unknown | MIRO2 (MIRO-RELATED GTP-ASE 2) GTPASE/ CALCIUM ION BINDING |
AT1G78870 | Predictedtwo hybrid | FSW = 0.0162
| Unknown | UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G36300 | Predictedtwo hybrid | FSW = 0.0162
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT3G07790 | Predictedtwo hybrid | FSW = 0.0281
| Unknown | DGCR14-RELATED |
AT3G17920 | Predictedtwo hybrid | FSW = 0.1404
| Unknown | PROTEIN BINDING |
AT3G52760 | Predictedtwo hybrid | FSW = 0.1203
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT4G30400 | Predictedtwo hybrid | FSW = 0.0381
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G41770 | Predictedtwo hybrid | FSW = 0.0367
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT4G29720 | Predictedtwo hybrid | FSW = 0.0443
| Unknown | ATPAO5 (POLYAMINE OXIDASE 5) AMINE OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE |
AT4G31400 | Predictedtwo hybrid | FSW = 0.0410
| Unknown | DNA-DIRECTED DNA POLYMERASE/ DAMAGED DNA BINDING |
AT5G57320 | Predictedin vitrotwo hybrid | FSW = 0.0410
| Unknown | VILLIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454