Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G12010 - ( unknown protein )
25 Proteins interacs with AT5G12010Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G10350 | PredictedAffinity Capture-WesternAffinity Capture-WesternSynthetic LethalityReconstituted ComplexProtein-peptideSynthetic LethalityAffinity Capture-Western | FSW = 0.0622
| Class C:vacuole | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT3G23600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0414
| Class C:plasma membrane | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT4G36490 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1221
| Class C:plasma membrane | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT3G11730 | PredictedAffinity Capture-MS | FSW = 0.0071
| Class C:plasma membrane | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
AT1G13320 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1029
| Class C:plasma membrane | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G04740 | Predictedtwo hybrid | FSW = 0.0440
| Unknown | ACT DOMAIN-CONTAINING PROTEIN |
AT1G19660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0316
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT5G03650 | PredictedAffinity Capture-MS | FSW = 0.0114
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT5G48880 | PredictedSynthetic Lethality | FSW = 0.0646
| Unknown | PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC |
AT3G51300 | PredictedAffinity Capture-MS | FSW = 0.0210
| Unknown | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING |
AT4G10920 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0653
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT4G16420 | PredictedSynthetic Lethality | FSW = 0.0215
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT4G27070 | PredictedAffinity Capture-MS | FSW = 0.0726
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT1G29970 | PredictedAffinity Capture-MS | FSW = 0.0682
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT1G34580 | PredictedSynthetic Lethality | FSW = 0.0367
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G63370 | PredictedAffinity Capture-MS | FSW = 0.0395
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G31260 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | APG9 (AUTOPHAGY 9) |
AT3G45950 | Predictedinterologs mapping | FSW = 0.0476
| Unknown | SPLICING FACTOR-RELATED |
AT4G04210 | PredictedAffinity Capture-MS | FSW = 0.0281
| Unknown | PUX4 PROTEIN BINDING |
AT4G29140 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0184
| Unknown | MATE EFFLUX PROTEIN-RELATED |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT3G49420 | PredictedSynthetic Rescue | FSW = 0.0260
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G14180 | PredictedSynthetic Lethality | FSW = 0.0479
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G24510 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0289
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454