Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G01800 - ( preprotein translocase secA subunit putative )

23 Proteins interacs with AT4G01800
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G02660

Predicted

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FSW = 0.0784

Class C:

plastid

 EMB2768 (EMBRYO DEFECTIVE 2768) ATP BINDING / RNA BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / TYROSINE-TRNA LIGASE
AT5G23140

Predicted

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FSW = 0.2045

Class C:

plastid

 NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE
AT2G26080

Predicted

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FSW = 0.0635

Class C:

plastid

 ATGLDP2 (ARABIDOPSIS THALIANA GLYCINE DECARBOXYLASE P-PROTEIN 2) ATP BINDING / GLYCINE DEHYDROGENASE (DECARBOXYLATING)
AT4G30690

Predicted

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FSW = 0.1470

Class C:

plastid

 TRANSLATION INITIATION FACTOR 3 (IF-3) FAMILY PROTEIN
AT3G54440

Predicted

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FSW = 0.0256

Class C:

plastid

 GLYCOSIDE HYDROLASE FAMILY 2 PROTEIN
AT3G18680

Predicted

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FSW = 0.2338

Class C:

plastid

 ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN
AT5G55280

Predicted

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FSW = 0.1112

Class C:

plastid

 FTSZ1-1 PROTEIN BINDING / STRUCTURAL MOLECULE
AT5G24020

Predicted

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FSW = 0.0345

Class C:

plastid

 MIND ATPASE/ CALCIUM-DEPENDENT ATPASE/ PROTEIN BINDING / PROTEIN HOMODIMERIZATION
AT3G27850

Predicted

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FSW = 0.1925

Class C:

plastid

 RPL12-C (RIBOSOMAL PROTEIN L12-C) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G18710

Predicted

far western blotting

FSW = 0.0769

Class C:

plastid

 SCY1 (SECY HOMOLOG 1) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER
AT1G32990

Predicted

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FSW = 0.2353

Class C:

plastid

 PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME
ATCG00190Predicted

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FSW = 0.2659

Class C:

plastid

 CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION
ATCG00160Predicted

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FSW = 0.1133

Class C:

plastid

 CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00810Predicted

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FSW = 0.1994

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
AT4G37910

Predicted

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FSW = 0.1305

Unknown

 MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT2G36880

Predicted

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FSW = 0.0932

Unknown

 MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE
AT3G09210

Predicted

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FSW = 0.1709

Unknown

 PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) TRANSCRIPTION ELONGATION REGULATOR
AT4G02930

Predicted

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FSW = 0.1554

Unknown

 ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT4G11060

Predicted

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FSW = 0.2286

Unknown

 MTSSB (MITOCHONDRIALLY TARGETED SINGLE-STRANDED DNA BINDING PROTEIN) SINGLE-STRANDED DNA BINDING
AT1G65290

Predicted

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FSW = 0.0430

Unknown

 MTACP2 (MITOCHONDRIAL ACYL CARRIER PROTEIN 2) ACYL CARRIER/ METAL ION BINDING
AT2G20060

Predicted

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FSW = 0.2243

Unknown

 RIBOSOMAL PROTEIN L4 FAMILY PROTEIN
AT2G43360

Predicted

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FSW = 0.0147

Unknown

 BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE
AT5G51140

Predicted

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FSW = 0.1193

Unknown

 PSEUDOURIDINE SYNTHASE FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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