Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G41090 - ( calmodulin-like calcium-binding protein 22 kDa (CaBP-22) )
95 Proteins interacs with AT2G41090Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G02880 | Experimentalprotein array | FSW = 0.0214
| Unknown | LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE |
AT5G49760 | Experimentalprotein array | FSW = 0.0226
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN / PROTEIN KINASE FAMILY PROTEIN |
AT3G56270 | Experimentalprotein array | FSW = 0.0106
| Unknown | UNKNOWN PROTEIN |
AT4G37870 | Experimentalprotein array | FSW = 0.0065
| Unknown | PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1) ATP BINDING / PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)/ PHOSPHOENOLPYRUVATE CARBOXYKINASE/ PURINE NUCLEOTIDE BINDING |
ATCG00020 | Experimentalprotein array | FSW = 0.0163
| Unknown | ENCODES CHLOROPHYLL BINDING PROTEIN D1 A PART OF THE PHOTOSYSTEM II REACTION CENTER CORE |
AT5G56030 | Experimentalprotein array | FSW = 0.0020
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT5G37670 | Experimentalprotein array | FSW = 0.0327
| Unknown | 157 KDA CLASS I-RELATED SMALL HEAT SHOCK PROTEIN-LIKE (HSP157-CI) |
AT4G23650 | Experimentalprotein array | FSW = 0.0200
| Unknown | CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G27070 | Experimentalprotein array | FSW = 0.0202
| Unknown | AGL53 TRANSCRIPTION FACTOR |
AT1G74740 | Experimentalprotein array | FSW = 0.0283
| Unknown | CPK30 (CALCIUM-DEPENDENT PROTEIN KINASE 30) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
AT5G01890 | Experimentalprotein array | FSW = 0.0148
| Unknown | LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE |
AT5G56890 | Experimentalprotein array | FSW = 0.0181
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G27190 | Experimentalprotein array | FSW = 0.0280
| Unknown | LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE |
AT1G54610 | Experimentalprotein array | FSW = 0.0260
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G19100 | Experimentalprotein array | FSW = 0.0136
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT5G13790 | Experimentalprotein array | FSW = 0.0165
| Unknown | AGL15 (AGAMOUS-LIKE 15) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G35600 | Experimentalprotein array | FSW = 0.0109
| Unknown | CONNEXIN 32 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G48010 | Experimentalprotein array | FSW = 0.0280
| Unknown | RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3) KINASE/ RECEPTOR SIGNALING PROTEIN SERINE/THREONINE KINASE |
AT3G28450 | Experimentalprotein array | FSW = 0.1110
| Unknown | LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE |
AT1G56145 | Experimentalprotein array | FSW = 0.0280
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN / PROTEIN KINASE FAMILY PROTEIN |
AT3G23310 | Experimentalprotein array | FSW = 0.0074
| Unknown | PROTEIN KINASE PUTATIVE |
AT5G20810 | Experimentalprotein array | FSW = 0.0163
| Unknown | AUXIN-RESPONSIVE PROTEIN PUTATIVE / SMALL AUXIN UP RNA (SAUR_B) |
AT4G18950 | Experimentalprotein array | FSW = 0.0148
| Unknown | ANKYRIN PROTEIN KINASE PUTATIVE |
AT4G02640 | Experimentalprotein array | FSW = 0.0430
| Unknown | BZO2H1 DNA BINDING / PROTEIN HETERODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT4G14340 | Experimentalprotein array | FSW = 0.0067
| Unknown | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G23260 | Experimentalprotein array | FSW = 0.0058
| Unknown | TT16 (TRANSPARENT TESTA16) TRANSCRIPTION FACTOR |
AT5G49450 | Experimentalprotein array | FSW = 0.0761
| Unknown | ATBZIP1 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 1) DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR |
AT3G58120 | Experimentalprotein array | FSW = 0.0280
| Unknown | BZIP61 DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G38800 | Experimentalprotein array | FSW = 0.0303
| Unknown | ATBZIP43 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 43) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G30530 | Experimentalprotein array | FSW = 0.0533
| Unknown | ATBZIP42 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 42) DNA BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ TRANSCRIPTION FACTOR |
AT2G24840 | Experimentalprotein array | FSW = 0.0202
| Unknown | AGL61 (AGAMOUS-LIKE 61) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G66770 | Experimentalprotein array | FSW = 0.0204
| Unknown | SCARECROW TRANSCRIPTION FACTOR FAMILY PROTEIN |
AT4G37940 | Experimentalprotein array | FSW = 0.0098
| Unknown | AGL21 TRANSCRIPTION FACTOR |
AT2G46130 | Experimentalprotein array | FSW = 0.0331
| Unknown | WRKY43 TRANSCRIPTION FACTOR |
AT3G30260 | Experimentalprotein array | FSW = 0.0163
| Unknown | AGL79 (AGAMOUS-LIKE 79) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G48670 | Experimentalprotein array | FSW = 0.0280
| Unknown | AGL80 (AGAMOUS-LIKE 80) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G58110 | Experimentalprotein array | FSW = 0.0105
| Unknown | BZIP FAMILY TRANSCRIPTION FACTOR |
AT5G24800 | Experimentalprotein array | FSW = 0.0521
| Unknown | BZIP9 (BASIC LEUCINE ZIPPER 9) DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR |
AT5G27050 | Experimentalprotein array | FSW = 0.0126
| Unknown | AGL101 TRANSCRIPTION FACTOR |
AT4G23810 | Experimentalprotein array | FSW = 0.0400
| Unknown | WRKY53 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G10030 | Experimentalprotein array | FSW = 0.0126
| Unknown | TGA4 (TGACG MOTIF-BINDING FACTOR 4) DNA BINDING / CALMODULIN BINDING / TRANSCRIPTION FACTOR |
AT2G31180 | Experimentalprotein array | FSW = 0.0148
| Unknown | MYB14 (MYB DOMAIN PROTEIN 14) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G23290 | Experimentalprotein array | FSW = 0.0163
| Unknown | ATMYB70 (MYB DOMAIN PROTEIN 70) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G77145 | Experimentalprotein array | FSW = 0.1187
| Unknown | UNKNOWN PROTEIN |
AT5G15830 | Experimentalprotein array | FSW = 0.0181
| Unknown | ATBZIP3 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G59530 | Experimentalprotein array | FSW = 0.0457
| Unknown | ATBZIP4 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 4) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G19290 | Experimentalprotein array | FSW = 0.0191
| Unknown | ABF4 (ABRE BINDING FACTOR 4) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT3G62420 | Experimentalprotein array | FSW = 0.0543
| Unknown | ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53) DNA BINDING / PROTEIN HETERODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT4G36250 | Experimentalprotein array | FSW = 0.0126
| Unknown | ALDH3F1 (ALDEHYDE DEHYDROGENASE 3F1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD) |
AT2G28380 | Experimentalprotein array | FSW = 0.0126
| Unknown | DRB2 (DSRNA-BINDING PROTEIN 2) DOUBLE-STRANDED RNA BINDING |
AT1G75100 | Experimentalprotein array | FSW = 0.0327
| Unknown | JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1) HEAT SHOCK PROTEIN BINDING |
AT3G13320 | Experimentalprotein array | FSW = 0.0152
| Unknown | CAX2 (CATION EXCHANGER 2) CALCIUMCATION ANTIPORTER/ CALCIUMHYDROGEN ANTIPORTER |
AT3G20110 | Experimentalprotein array | FSW = 0.0096
| Unknown | CYP705A20 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT3G61880 | Experimentalprotein array | FSW = 0.0148
| Unknown | CYP78A9 (CYTOCHROME P450 78A9) MONOOXYGENASE/ OXYGEN BINDING |
AT4G08980 | Experimentalprotein array | FSW = 0.0096
| Unknown | F-BOX FAMILY PROTEIN (FBW2) |
AT4G24390 | Experimentalprotein array | FSW = 0.0136
| Unknown | F-BOX FAMILY PROTEIN (FBX14) |
AT3G12350 | Experimentalprotein array | FSW = 0.0272
| Unknown | F-BOX FAMILY PROTEIN |
AT2G24540 | Experimentalprotein array | FSW = 0.0126
| Unknown | AFR (ATTENUATED FAR-RED RESPONSE) |
AT4G02410 | Experimentalprotein array | FSW = 0.0148
| Unknown | LECTIN PROTEIN KINASE FAMILY PROTEIN |
AT1G60040 | Experimentalprotein array | FSW = 0.0117
| Unknown | AGL49 (AGAMOUS-LIKE 49) TRANSCRIPTION FACTOR |
AT5G39810 | Experimentalprotein array | FSW = 0.0136
| Unknown | AGL98 (AGAMOUS-LIKE 98) TRANSCRIPTION FACTOR |
AT5G41200 | Experimentalprotein array | FSW = 0.0181
| Unknown | AGL75 (AGAMOUS-LIKE 75) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G49490 | Experimentalprotein array | FSW = 0.0303
| Unknown | AGL83 (AGAMOUS-LIKE 83) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G40120 | Experimentalprotein array | FSW = 0.0126
| Unknown | AGL76 (AGAMOUS-LIKE 76) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G53510 | Experimentalprotein array | FSW = 0.0148
| Unknown | ATMPK18 MAP KINASE |
ATMG00870 | Experimentalprotein array | FSW = 0.0163
| Unknown | HYPOTHETICAL PROTEIN |
AT3G50310 | Experimentalprotein array | FSW = 0.0148
| Unknown | MAPKKK20 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G37240 | Experimentalprotein array | FSW = 0.0163
| Unknown | UNKNOWN PROTEIN |
AT5G47810 | Experimentalprotein array | FSW = 0.0136
| Unknown | PFK2 (PHOSPHOFRUCTOKINASE 2) 6-PHOSPHOFRUCTOKINASE |
AT4G13020 | Experimentalprotein array | FSW = 0.0026
| Unknown | MHK ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G12200 | Experimentalprotein array | FSW = 0.0011
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G04570 | Experimentalprotein array | FSW = 0.0117
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G68380 | Experimentalprotein array | FSW = 0.0280
| Unknown | UNKNOWN PROTEIN |
AT1G80120 | Experimentalprotein array | FSW = 0.0204
| Unknown | UNKNOWN PROTEIN |
AT5G64400 | Experimentalprotein array | FSW = 0.0272
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CHCH (INTERPROIPR010625) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G095701) HAS 218 BLAST HITS TO 216 PROTEINS IN 80 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 66 FUNGI - 60 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 35 (SOURCE NCBI BLINK) |
AT4G16410 | Experimentalprotein array | FSW = 0.0272
| Unknown | UNKNOWN PROTEIN |
AT4G23170 | Experimentalprotein array | FSW = 0.0163
| Unknown | EP1 PROTEIN KINASE |
AT5G10520 | Experimentalprotein array | FSW = 0.0117
| Unknown | RBK1 (ROP BINDING PROTEIN KINASES 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G14370 | Experimentalprotein array | FSW = 0.0136
| Unknown | APK2A (PROTEIN KINASE 2A) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G28390 | Experimentalprotein array | FSW = 0.0108
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G56040 | Experimentalprotein array | FSW = 0.0260
| Unknown | LEUCINE-RICH REPEAT PROTEIN KINASE PUTATIVE |
AT1G68400 | Experimentalprotein array | FSW = 0.0181
| Unknown | LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE |
AT5G24080 | Experimentalprotein array | FSW = 0.0163
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G30980 | Experimentalprotein array | FSW = 0.0206
| Unknown | ASKDZETA (ARABIDOPSIS SHAGGY-RELATED PROTEIN KINASE DZETA) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G39540 | Experimentalprotein array | FSW = 0.0331
| Unknown | SHIKIMATE KINASE FAMILY PROTEIN |
AT4G34380 | Experimentalprotein array | FSW = 0.0400
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G66790 | Experimentalprotein array | FSW = 0.0457
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G39670 | Experimentalprotein array | FSW = 0.1560
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G12680 | Experimentalprotein array | FSW = 0.0148
| Unknown | PEPKR2 (PHOSPHOENOLPYRUVATE CARBOXYLASE-RELATED KINASE 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G35410 | Experimentalprotein array | FSW = 0.0096
| Unknown | SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE |
AT4G30960 | Experimentalprotein array | FSW = 0.0091
| Unknown | SIP3 (SOS3-INTERACTING PROTEIN 3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G20930 | Experimentalprotein array | FSW = 0.0117
| Unknown | CDKB22 (CYCLIN-DEPENDENT KINASE B22) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE |
AT2G20110 | Experimentalprotein array | FSW = 0.0181
| Unknown | TESMIN/TSO1-LIKE CXC DOMAIN-CONTAINING PROTEIN |
AT3G59150 | Experimentalprotein array | FSW = 0.0303
| Unknown | F-BOX FAMILY PROTEIN |
AT4G20780 | PredictedGene fusion methodCo-expression | FSW = 0.0148
| Unknown | CALCIUM-BINDING PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454