Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G02880 - ( leucine-rich repeat transmembrane protein kinase putative )
13 Proteins interacs with AT3G02880Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G28450![]() ![]() ![]() ![]() | Experimentalprotein array | FSW = 0.3011
| Class A:plasma membraneClass B:vacuoleextracellularClass D:plasma membrane (p = 0.25)extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE |
AT3G43810![]() ![]() ![]() ![]() | Experimentalprotein array | FSW = 0.0323
| Class A:plasma membraneClass B:vacuoleextracellularClass D:cytosol (p = 0.67) | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G66410![]() ![]() ![]() ![]() | Experimentalprotein array | FSW = 0.0362
| Class A:plasma membraneClass B:vacuoleextracellularClass D:cytosol (p = 0.67) | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT3G51920![]() ![]() ![]() ![]() | Experimentalprotein array | FSW = 0.0493
| Unknown | CAM9 (CALMODULIN 9) CALCIUM ION BINDING |
AT5G21274![]() ![]() ![]() ![]() | Experimentalprotein array | FSW = 0.0456
| Unknown | CAM6 (CALMODULIN 6) CALCIUM ION BINDING |
AT2G41090![]() ![]() ![]() ![]() | Experimentalprotein array | FSW = 0.0214
| Unknown | CALMODULIN-LIKE CALCIUM-BINDING PROTEIN 22 KDA (CABP-22) |
AT5G04780![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.6000
| Class C:plasma membrane | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MEF1 (MITOCHONDRIAL RNA EDITING FACTOR 1) (TAIRAT5G526301) HAS 13798 BLAST HITS TO 4918 PROTEINS IN 150 SPECIES ARCHAE - 0 BACTERIA - 4 METAZOA - 59 FUNGI - 36 PLANTS - 13447 VIRUSES - 0 OTHER EUKARYOTES - 252 (SOURCE NCBI BLINK) |
AT1G05640![]() ![]() ![]() ![]() | PredictedEnriched domain pairGene fusion method | FSW = 0.5471
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT2G15630![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.4831
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G68910![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.4831
| Unknown | UNKNOWN PROTEIN |
AT2G29220![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.2896
| Unknown | LECTIN PROTEIN KINASE PUTATIVE |
AT3G22420![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.6000
| Unknown | WNK2 (WITH NO K 2) KINASE/ PROTEIN KINASE |
AT2G35030![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.4831
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454