Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G03030 - ( DNAJ heat shock N-terminal domain-containing protein )
12 Proteins interacs with AT5G03030Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09820![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2319
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT3G25800![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2635
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G45380![]() ![]() ![]() ![]() | PredictedAffinity Capture-MStwo hybrid | FSW = 0.3051
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT4G14340![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2851
| Unknown | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G54300![]() ![]() ![]() ![]() | PredictedAffinity Capture-Western | FSW = 0.3506
| Unknown | ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) |
AT2G38960![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSReconstituted Complextwo hybridAffinity Capture-MS | FSW = 0.1870
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT3G12280![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0078
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT2G31060![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-Western | FSW = 0.3601
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT3G53880![]() ![]() ![]() ![]() | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationSynthetic Lethality | FSW = 0.1610
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G31985![]() ![]() ![]() ![]() | PredictedReconstituted ComplexAffinity Capture-MStwo hybridtwo hybridtwo hybridtwo hybridReconstituted Complexinterologs mappingAffinity Capture-WesternAffinity Capture-MS | FSW = 0.4690
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39C) |
AT4G37490![]() ![]() ![]() ![]() | PredictedSynthetic RescueAffinity Capture-Western | FSW = 0.1345
| Unknown | CYCB11 (CYCLIN B11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G35795![]() ![]() ![]() ![]() | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0697
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454