Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G29210 - ( splicing factor PWI domain-containing protein )
17 Proteins interacs with AT2G29210Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0083
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G17520 | Predictedbiochemical | FSW = 0.0186
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT1G16610 | Predictedin vivoAffinity Capture-MS | FSW = 0.0336
| Unknown | SR45 RNA BINDING / PROTEIN BINDING |
AT4G32420 | Predictedin vivo | FSW = 0.1616
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
AT2G28910 | Predictedtwo hybridtwo hybrid | FSW = 0.0659
| Unknown | CXIP4 (CAX INTERACTING PROTEIN 4) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT1G51510 | Predictedin vivoCo-expression | FSW = 0.0896
| Unknown | Y14 RNA BINDING / PROTEIN BINDING |
AT1G76860 | Predictedtwo hybrid | FSW = 0.0211
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G33980 | Predictedin vivoCo-expression | FSW = 0.1616
| Unknown | SMG-4/UPF3 FAMILY PROTEIN |
AT3G48710 | Predictedin vitroCo-expression | FSW = 0.2449
| Unknown | EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S DEK C-TERMINAL (INTERPROIPR014876) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G635502) HAS 48226 BLAST HITS TO 25734 PROTEINS IN 1103 SPECIES ARCHAE - 54 BACTERIA - 6881 METAZOA - 21026 FUNGI - 4604 PLANTS - 1514 VIRUSES - 306 OTHER EUKARYOTES - 13841 (SOURCE NCBI BLINK) |
AT2G39260 | Predictedin vivoCo-expression | FSW = 0.0504
| Unknown | RNA BINDING / BINDING / PROTEIN BINDING |
AT1G08780 | PredictedSynthetic Lethality | FSW = 0.0560
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT2G32850 | Predictedbiochemical | FSW = 0.0952
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G37840 | Predictedbiochemical | FSW = 0.0107
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G08500 | Predictedbiochemical | FSW = 0.0621
| Unknown | MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING |
AT5G23290 | PredictedSynthetic Lethality | FSW = 0.0429
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G49510 | PredictedSynthetic Lethality | FSW = 0.0311
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT4G19190 | Predictedtwo hybrid | FSW = 0.0490
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454