Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G32420 - ( peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein )

13 Proteins interacs with AT4G32420
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G18810

Experimental

two hybrid

FSW = 0.2222

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 SCL28 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G55460

Experimental

two hybrid

FSW = 0.1975

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 SCL30 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G50670

Experimental

two hybrid

FSW = 0.0267

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G02840

Experimental

two hybrid

FSW = 0.2171

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G16610

Predicted

Affinity Capture-MS

FSW = 0.1333

Class C:

nucleus

 SR45 RNA BINDING / PROTEIN BINDING
AT5G16820

Predicted

Reconstituted Complex

FSW = 0.0773

Class C:

nucleus

 HSF3 (HEAT SHOCK FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR
AT5G56000

Predicted

in vitro

Reconstituted Complex

FSW = 0.0646

Unknown

 HEAT SHOCK PROTEIN 81-4 (HSP81-4)
AT4G35800

Predicted

two hybrid

in vivo

in vitro

Co-expression

FSW = 0.0068

Unknown

 NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G02490

Predicted

in vitro

Reconstituted Complex

FSW = 0.0363

Unknown

 HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2)
AT1G15200

Predicted

Affinity Capture-Western

two hybrid

Affinity Capture-Western

two hybrid

FSW = 0.1008

Unknown

 PROTEIN-PROTEIN INTERACTION REGULATOR FAMILY PROTEIN
AT2G29210

Predicted

in vivo

FSW = 0.1616

Unknown

 SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN
AT3G48710

Predicted

in vivo

in vitro

FSW = 0.3025

Unknown

 EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S DEK C-TERMINAL (INTERPROIPR014876) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G635502) HAS 48226 BLAST HITS TO 25734 PROTEINS IN 1103 SPECIES ARCHAE - 54 BACTERIA - 6881 METAZOA - 21026 FUNGI - 4604 PLANTS - 1514 VIRUSES - 306 OTHER EUKARYOTES - 13841 (SOURCE NCBI BLINK)
AT3G53570

Predicted

Affinity Capture-MS

FSW = 0.0963

Unknown

 AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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