Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G62980 - ( TIR1 (TRANSPORT INHIBITOR RESPONSE 1) auxin binding / protein binding / ubiquitin-protein ligase )
19 Proteins interacs with AT3G62980Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G41790 | Experimentaltwo hybrid | FSW = 0.0137
| Unknown | CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING |
AT5G05000 | Experimentalbiochemicalfar western blotting | FSW = 0.0978
| Unknown | TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34) GTP BINDING |
AT5G38410 | Experimental | FSW = 0.0381
| Unknown | RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 3B / RUBISCO SMALL SUBUNIT 3B (RBCS-3B) (ATS3B) |
AT1G02280 | Experimentalfilter binding | FSW = 0.0978
| Unknown | TOC33 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT5G63110 | Experimental | FSW = 0.0067
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT1G75950 | Experimentaltwo hybridAffinity Capture-Westerninteraction detection methodinteraction detection methodtwo hybrid | FSW = 0.0731
| Unknown | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G14550 | ExperimentalReconstituted Complex | FSW = 0.0803
| Unknown | IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14) PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR |
AT1G04550 | Experimentalpull downReconstituted Complex | FSW = 0.0410
| Unknown | IAA12 (AUXIN-INDUCED PROTEIN 12) TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR |
AT1G04250 | Experimentalpull downReconstituted ComplexAffinity Capture-Western | FSW = 0.0726
| Unknown | AXR3 (AUXIN RESISTANT 3) TRANSCRIPTION FACTOR |
AT1G04240 | Experimentalpull downReconstituted Complexin vitro | FSW = 0.0832
| Unknown | SHY2 (SHORT HYPOCOTYL 2) TRANSCRIPTION FACTOR |
AT5G20570 | Experimentalpull down | FSW = 0.0908
| Unknown | RBX1 (RING-BOX 1) PROTEIN BINDING |
AT3G23050 | Experimentalaffinity technologyReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-Westernpull downinteraction detection methodAffinity Capture-WesternReconstituted Complexin vitroaffinity technology | FSW = 0.2208
| Unknown | IAA7 (INDOLE-3-ACETIC ACID 7) TRANSCRIPTION FACTOR |
AT4G02570 | ExperimentalAffinity Capture-WesternAffinity Capture-Westernmolecular sievingAffinity Capture-Westerncoimmunoprecipitationaffinity technology | FSW = 0.1106
| Unknown | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
AT4G14560 | Experimentalpull downReconstituted Complex | FSW = 0.1404
| Unknown | IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE) PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT1G10940 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.0412
| Unknown | SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE |
AT3G21850 | Experimentaltwo hybrid | FSW = 0.1212
| Unknown | ASK9 (ARABIDOPSIS SKP1-LIKE 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G42190 | Experimentaltwo hybridtwo hybridAffinity Capture-Western | FSW = 0.0386
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G36800 | Experimentalpull downReconstituted Complex | FSW = 0.0503
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
AT4G34210 | Experimentaltwo hybrid | FSW = 0.0955
| Unknown | ASK11 (ARABIDOPSIS SKP1-LIKE 11) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454