Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G10370 - ( SDP6 (SUGAR-DEPENDENT 6) glycerol-3-phosphate dehydrogenase )
39 Proteins interacs with AT3G10370Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G08670 | Predictedpull down | FSW = 0.0556
| Class C:mitochondrion | ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM |
AT2G33210 | Predictedpull down | FSW = 0.0933
| Class C:mitochondrion | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT2G20800 | PredictedPhenotypic Enhancement | FSW = 0.0485
| Class C:mitochondrion | NDB4 (NAD(P)H DEHYDROGENASE B4) NADH DEHYDROGENASE |
AT4G05020 | PredictedPhenotypic Enhancement | FSW = 0.1214
| Class C:mitochondrion | NDB2 (NAD(P)H DEHYDROGENASE B2) FAD BINDING / DISULFIDE OXIDOREDUCTASE/ OXIDOREDUCTASE |
AT2G21170 | Predictedsynthetic growth defect | FSW = 0.0889
| Class C:mitochondrion | TIM (TRIOSEPHOSPHATE ISOMERASE) CATALYTIC/ TRIOSE-PHOSPHATE ISOMERASE |
AT3G05630 | Predictedpull down | FSW = 0.0606
| Unknown | PLDP2 PHOSPHOLIPASE D |
AT2G21280 | Predictedpull down | FSW = 0.0698
| Unknown | SULA BINDING / CATALYTIC/ COENZYME BINDING |
AT2G33800 | Predictedpull down | FSW = 0.0271
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT2G29630 | Predictedpull down | FSW = 0.0635
| Unknown | THIC (THIAMINC) ADP-RIBOSE PYROPHOSPHOHYDROLASE/ CATALYTIC/ IRON-SULFUR CLUSTER BINDING |
AT5G40610 | PredictedPhenotypic Enhancement | FSW = 0.0250
| Unknown | GLYCEROL-3-PHOSPHATE DEHYDROGENASE (NAD+) / GPDH |
AT2G22360 | Predictedpull down | FSW = 0.0818
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT1G29900 | Predictedpull down | FSW = 0.0137
| Unknown | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
AT4G19710 | Predictedpull down | FSW = 0.0216
| Unknown | BIFUNCTIONAL ASPARTATE KINASE/HOMOSERINE DEHYDROGENASE PUTATIVE / AK-HSDH PUTATIVE |
AT1G24360 | Predictedpull down | FSW = 0.0317
| Unknown | 3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE CHLOROPLAST / 3-KETOACYL-ACYL CARRIER PROTEIN REDUCTASE |
AT5G49030 | Predictedpull down | FSW = 0.0346
| Unknown | OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT5G64300 | Predictedpull down | FSW = 0.0504
| Unknown | ATGCH 34-DIHYDROXY-2-BUTANONE-4-PHOSPHATE SYNTHASE/ GTP CYCLOHYDROLASE II |
AT2G30390 | Predictedpull down | FSW = 0.0195
| Unknown | FC2 (FERROCHELATASE 2) FERROCHELATASE |
AT2G17265 | Predictedpull down | FSW = 0.0766
| Unknown | HSK (HOMOSERINE KINASE) HOMOSERINE KINASE |
AT4G26530 | Predictedin vitroin vitro | FSW = 0.0492
| Unknown | FRUCTOSE-BISPHOSPHATE ALDOLASE PUTATIVE |
ATCG00380 | Predictedpull down | FSW = 0.0300
| Unknown | CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4 |
ATCG00830 | Predictedpull down | FSW = 0.0353
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
AT1G50510 | Predictedpull down | FSW = 0.1119
| Unknown | INDIGOIDINE SYNTHASE A FAMILY PROTEIN |
AT2G36880 | Predictedtwo hybrid | FSW = 0.0824
| Unknown | MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
AT3G17390 | Predictedtwo hybrid | FSW = 0.0483
| Unknown | MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE |
AT5G03690 | Predictedin vitroin vitro | FSW = 0.0766
| Unknown | FRUCTOSE-BISPHOSPHATE ALDOLASE PUTATIVE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0110
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G01850 | Predictedtwo hybrid | FSW = 0.0766
| Unknown | SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
AT5G44790 | Predictedpull down | FSW = 0.0693
| Unknown | RAN1 (RESPONSIVE-TO-ANTAGONIST 1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / COPPER ION TRANSMEMBRANE TRANSPORTER |
AT2G30920 | Predictedpull down | FSW = 0.0558
| Unknown | ATCOQ3 (ARABDIOPSIS THALIANA COENZYME Q 3) HEXAPRENYLDIHYDROXYBENZOATE METHYLTRANSFERASE/ POLYPRENYLDIHYDROXYBENZOATE METHYLTRANSFERASE |
AT1G24340 | Predictedpull down | FSW = 0.0762
| Unknown | EMB2421 (EMBRYO DEFECTIVE 2421) MONOOXYGENASE/ OXIDOREDUCTASE |
AT1G73740 | Predictedpull down | FSW = 0.0523
| Unknown | GLYCOSYL TRANSFERASE FAMILY 28 PROTEIN |
AT1G76050 | Predictedpull down | FSW = 0.1119
| Unknown | PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT2G04560 | Predictedpull down | FSW = 0.0856
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G17760 | Predictedcomigration in non denaturing gel electrophoresis | FSW = 0.0504
| Unknown | GAD5 (GLUTAMATE DECARBOXYLASE 5) CALMODULIN BINDING |
AT3G44600 | Predictedpull down | FSW = 0.0238
| Unknown | CYP71 (CYCLOPHILIN71) CHROMATIN BINDING / HISTONE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G47760 | Predictedpull down | FSW = 0.0454
| Unknown | ATATH4 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / TRANSPORTER |
AT5G10050 | Predictedpull down | FSW = 0.0808
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G23230 | Predictedpull down | FSW = 0.0727
| Unknown | NIC2 (NICOTINAMIDASE 2) CATALYTIC/ NICOTINAMIDASE |
AT4G30480 | Predictedco-fractionationCo-fractionation | FSW = 0.0136
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454