Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G48760 - ( 60S ribosomal protein L13A (RPL13aD) )
14 Proteins interacs with AT5G48760Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G07110 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1786
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AA) |
AT1G76850 | Predictedtwo hybridtwo hybrid | FSW = 0.0523
| Unknown | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) |
AT5G03730 | Predictedtwo hybrid | FSW = 0.0109
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT1G21170 | Predictedtwo hybrid | FSW = 0.0294
| Unknown | SEC5B |
AT1G48790 | Predictedtwo hybridtwo hybrid | FSW = 0.0672
| Unknown | MOV34 FAMILY PROTEIN |
AT3G11470 | Predictedtwo hybrid | FSW = 0.2353
| Unknown | 4-PHOSPHOPANTETHEINYL TRANSFERASE FAMILY PROTEIN |
AT4G01710 | Predictedtwo hybridtwo hybrid | FSW = 0.1569
| Unknown | CRK (CROOKED) ACTIN BINDING |
AT4G16144 | Predictedtwo hybrid | FSW = 0.0856
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S MOV34/MPN/PAD-1 (INTERPROIPR000555) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MOV34 FAMILY PROTEIN (TAIRAT1G487901) HAS 622 BLAST HITS TO 459 PROTEINS IN 132 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 326 FUNGI - 156 PLANTS - 82 VIRUSES - 0 OTHER EUKARYOTES - 58 (SOURCE NCBI BLINK) |
AT5G11010 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0471
| Unknown | PRE-MRNA CLEAVAGE COMPLEX-RELATED |
AT4G32720 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0269
| Unknown | ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING |
AT5G53770 | Predictedtwo hybridtwo hybrid | FSW = 0.0103
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT3G24830 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0463
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT4G13170 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2048
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AC) |
AT3G09890 | PredictedGene fusion method | FSW = 0.2000
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454