Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G39850 - ( PXA1 (PEROXISOMAL ABC TRANSPORTER 1) ATPase coupled to transmembrane movement of substances )
13 Proteins interacs with AT4G39850Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G27600 | Predictedsynthetic growth defect | FSW = 0.0588
| Class C:peroxisome | LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7) LONG-CHAIN-FATTY-ACID-COA LIGASE/ PROTEIN BINDING |
AT3G51840 | Predictedtwo hybridtwo hybrid | FSW = 0.0667
| Class C:peroxisome | ACX4 (ACYL-COA OXIDASE 4) ACYL-COA OXIDASE/ OXIDOREDUCTASE |
AT5G17550 | Predictedtwo hybridin vitroin vivotwo hybridin vitroin vivotwo hybridin vitroin vivoAffinity Capture-MSin vivoin vitrotwo hybrid | FSW = 0.0345
| Class C:peroxisome | PEX19-2 |
AT5G38520 | PredictedAffinity Capture-MS | FSW = 0.0462
| Unknown | HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN |
AT5G52240 | PredictedAffinity Capture-MS | FSW = 0.0443
| Unknown | MSBP1 (MEMBRANE STEROID BINDING PROTEIN 1) STEROID BINDING |
AT1G15080 | Predictedtwo hybridinteraction prediction | FSW = 0.0909
| Unknown | LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) ACID PHOSPHATASE/ PHOSPHATIDATE PHOSPHATASE |
AT4G23860 | Predictedtwo hybridtwo hybrid | FSW = 0.0714
| Unknown | PHD FINGER PROTEIN-RELATED |
AT5G20850 | Predictedtwo hybridtwo hybrid | FSW = 0.0050
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT5G50870 | Predictedtwo hybridtwo hybrid | FSW = 0.0526
| Unknown | UBC27 (UBIQUITIN-CONJUGATING ENZYME 27) UBIQUITIN-PROTEIN LIGASE |
AT3G05220 | Predictedin vivo | FSW = 0.2500
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
AT2G24940 | PredictedAffinity Capture-MS | FSW = 0.0909
| Unknown | ATMAPR2 (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 2) HEME BINDING |
AT4G27650 | PredictedAffinity Capture-MS | FSW = 0.0714
| Unknown | PEL1 (PELOTA) TRANSLATION RELEASE FACTOR |
AT5G59410 | PredictedAffinity Capture-MS | FSW = 0.0500
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RAB5-INTERACTING (INTERPROIPR010742) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RAB5-INTERACTING FAMILY PROTEIN (TAIRAT2G290201) HAS 154 BLAST HITS TO 154 PROTEINS IN 67 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 108 FUNGI - 0 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454