Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G46210 - ( CUL4 (CULLIN4) protein binding / ubiquitin-protein ligase )
20 Proteins interacs with AT5G46210Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G02560 | Experimentaltwo hybridAffinity Capture-Westernaffinity technology | FSW = 0.1214
| Unknown | CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED) BINDING |
AT2G32950 | ExperimentalAffinity Capture-WesternAffinity Capture-Westernaffinity technology | FSW = 0.1576
| Unknown | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G10180 | ExperimentalAffinity Capture-WesternReconstituted ComplexAffinity Capture-Westernco-fractionationCo-fractionationin vitroaffinity technology | FSW = 0.5193
| Unknown | DET1 (DE-ETIOLATED 1) CATALYTIC |
AT4G21100 | ExperimentalAffinity Capture-Westernpull downReconstituted ComplexAffinity Capture-Westernin vitro | FSW = 0.3600
| Unknown | DDB1B (DAMAGED DNA BINDING PROTEIN 1 B) DAMAGED DNA BINDING / PROTEIN BINDING |
AT4G05420 | Experimentaltwo hybridin vitrotwo hybridReconstituted Complexpull downpull downpull downAffinity Capture-Western | FSW = 0.3584
| Unknown | DDB1A (DAMAGED DNA BINDING PROTEIN 1A) DNA BINDING / PROTEIN BINDING |
AT3G13550 | Experimentalmolecular sievingtwo hybridAffinity Capture-Westernaffinity technology | FSW = 0.2077
| Unknown | FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G20570 | Experimentaltwo hybridtwo hybridpull downAffinity Capture-Westernaffinity technologytwo hybrid | FSW = 0.0874
| Unknown | RBX1 (RING-BOX 1) PROTEIN BINDING |
AT5G42970 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.2348
| Unknown | COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING |
AT1G71230 | Experimental | FSW = 0.1441
| Unknown | CSN5B (COP9-SIGNALOSOME 5B) PROTEIN BINDING |
AT4G15900 | ExperimentalAffinity Capture-Western | FSW = 0.0229
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G14250 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.2258
| Unknown | COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) PROTEIN BINDING |
AT4G14110 | Experimental | FSW = 0.2424
| Unknown | COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) METALLOENDOPEPTIDASE/ PROTEIN BINDING |
AT5G58760 | Experimental | FSW = 0.2844
| Unknown | DDB2 (DAMAGED DNA-BINDING 2) NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT4G31160 | Experimental | FSW = 0.0683
| Unknown | DCAF1 (DDB1-CUL4 ASSOCIATED FACTOR 1) NUCLEOTIDE BINDING |
AT1G02980 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1254
| Unknown | CUL2 (CULLIN 2) UBIQUITIN PROTEIN LIGASE BINDING |
AT3G27640 | PredictedAffinity Capture-MS | FSW = 0.1219
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G13460 | PredictedColocalizationAffinity Capture-Western | FSW = 0.0696
| Unknown | SUVH9 HISTONE-LYSINE N-METHYLTRANSFERASE/ ZINC ION BINDING |
AT4G02570 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.0707
| Unknown | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
AT4G11110 | PredictedAffinity Capture-Western | FSW = 0.2963
| Unknown | SPA2 (SPA1-RELATED 2) PROTEIN BINDING / SIGNAL TRANSDUCER |
AT1G26830 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.1318
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454