Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G24190 - ( SHD (SHEPHERD) ATP binding / unfolded protein binding )
13 Proteins interacs with AT4G24190Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G04030 | PredictedShared biological functionEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.4216
| Class C:vacuoleplastidmitochondrion | CR88 ATP BINDING |
AT5G09590 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0228
| Class C:vacuoleplastidmitochondrion | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT5G56000 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.2348
| Class C:vacuoleplasma membrane | HEAT SHOCK PROTEIN 81-4 (HSP81-4) |
AT4G37910 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0271
| Class C:vacuolemitochondrion | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT5G56010 | PredictedShared biological functionEnriched domain pairPhylogenetic profile method | FSW = 0.6667
| Class C:plasma membranenucleus | HSP81-3 ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G56030 | PredictedShared biological functionEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1073
| Class C:plasma membranemitochondrion | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT5G52640 | PredictedShared biological functionEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0230
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G06010 | PredictedAffinity Capture-Western | FSW = 0.0773
| Class C:nucleus | ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT4G34430 | PredictedAffinity Capture-Western | FSW = 0.0346
| Class C:nucleus | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G33610 | PredictedAffinity Capture-Western | FSW = 0.0988
| Class C:nucleus | ATSWI3B (SWITCH SUBUNIT 3) DNA BINDING |
AT3G07770 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.3741
| Class C:mitochondrion | ATP BINDING |
AT4G08320 | Predictedtwo hybridEnriched domain pairCo-expression | FSW = 0.0684
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT5G67380 | PredictedAffinity Capture-MSReconstituted Complex | FSW = 0.0137
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454