Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G26940 - ( zinc finger (C2H2 type) family protein )
15 Proteins interacs with AT2G26940Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33410 | Predictedtwo hybrid | FSW = 0.0426
| Class C:nucleus | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / HNRNP PUTATIVE |
AT1G28060 | Predictedtwo hybrid | FSW = 0.0311
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
AT2G28910 | Predictedtwo hybrid | FSW = 0.0356
| Class C:nucleus | CXIP4 (CAX INTERACTING PROTEIN 4) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G08080 | Predictedtwo hybrid | FSW = 0.0342
| Unknown | SYP132 (SYNTAXIN OF PLANTS 132) SNAP RECEPTOR |
AT5G52040 | Predictedtwo hybrid | FSW = 0.0410
| Unknown | ATRSP41 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G02330 | Predictedtwo hybrid | FSW = 0.1778
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 59 (INTERPROIPR010756) HAS 1111 BLAST HITS TO 862 PROTEINS IN 155 SPECIES ARCHAE - 2 BACTERIA - 54 METAZOA - 381 FUNGI - 93 PLANTS - 45 VIRUSES - 5 OTHER EUKARYOTES - 531 (SOURCE NCBI BLINK) |
AT1G63800 | Predictedtwo hybrid | FSW = 0.0684
| Unknown | UBC5 (UBIQUITIN-CONJUGATING ENZYME 5) UBIQUITIN-PROTEIN LIGASE |
AT2G04520 | Predictedtwo hybrid | FSW = 0.0635
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 1A PUTATIVE / EIF-1A PUTATIVE / EIF-4C PUTATIVE |
AT1G16350 | Predictedtwo hybrid | FSW = 0.0168
| Unknown | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE |
AT3G48540 | Predictedtwo hybrid | FSW = 0.0381
| Unknown | CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN |
AT4G25550 | Predictedtwo hybrid | FSW = 0.0370
| Unknown | PROTEIN BINDING |
AT5G10220 | Predictedtwo hybrid | FSW = 0.0789
| Unknown | ANN6 (ANNEXIN ARABIDOPSIS 6) CALCIUM ION BINDING / CALCIUM-DEPENDENT PHOSPHOLIPID BINDING |
AT5G11200 | Predictedtwo hybrid | FSW = 0.0240
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G46750 | Predictedtwo hybrid | FSW = 0.0404
| Unknown | AGD9 (ARF-GAP DOMAIN 9) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT5G61970 | Predictedtwo hybrid | FSW = 0.1455
| Unknown | SIGNAL RECOGNITION PARTICLE-RELATED / SRP-RELATED |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454