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AT2G27030 - ( CAM5 (CALMODULIN 5) calcium ion binding )

51 Proteins interacs with AT2G27030

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G10350	Experimental pull down	FSW = 0.0026	Class A: vacuole Class B: plasma membrane Class D: nucleus (p = 0.78) cytosol (p = 0.67)	POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT1G51500	Experimental	FSW = 0.0329	Class A: vacuole Class B: plasma membrane	CER5 (ECERIFERUM 5) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT5G65930	Experimental	FSW = 0.0604	Class A: plasma membrane Class B: vacuole Class D: nucleus (p = 0.78) cytosol (p = 0.67)	ZWI (ZWICHEL) CALMODULIN BINDING / MICROTUBULE MOTOR
AT2G24570	Experimental filter binding Reconstituted Complex	FSW = 0.1091	Class B: vacuole plasma membrane nucleus Class D: nucleus (p = 0.78) cytosol (p = 0.67)	WRKY17 CALMODULIN BINDING / TRANSCRIPTION FACTOR
AT3G63400	Experimental filter binding	FSW = 0.0198	Class B: vacuole plasma membrane nucleus Class D: nucleus (p = 0.78)	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN
AT4G24240	Experimental filter binding interaction detection method protein complementation assay Reconstituted Complex	FSW = 0.0741	Class B: vacuole plasma membrane nucleus Class D: nucleus (p = 0.78)	WRKY7 CALMODULIN BINDING / TRANSCRIPTION FACTOR
AT2G23320	Experimental filter binding Reconstituted Complex	FSW = 0.0741	Class B: vacuole plasma membrane nucleus Class D: nucleus (p = 0.78)	WRKY15 CALMODULIN BINDING / TRANSCRIPTION FACTOR
AT4G31550	Experimental filter binding Reconstituted Complex	FSW = 0.1091	Class B: vacuole plasma membrane nucleus Class D: nucleus (p = 0.78)	WRKY11 CALMODULIN BINDING / TRANSCRIPTION FACTOR
AT5G28650	Experimental filter binding Reconstituted Complex	FSW = 0.0545	Class B: vacuole plasma membrane nucleus Class D: nucleus (p = 0.78)	WRKY74 CALMODULIN BINDING / TRANSCRIPTION FACTOR
AT2G30590	Experimental filter binding Reconstituted Complex	FSW = 0.1091	Class B: vacuole plasma membrane nucleus Class D: nucleus (p = 0.78)	WRKY21 CALMODULIN BINDING / TRANSCRIPTION FACTOR
AT3G04670	Experimental filter binding Reconstituted Complex	FSW = 0.1091	Class B: vacuole plasma membrane nucleus Class D: nucleus (p = 0.78)	WRKY39 CALMODULIN BINDING / TRANSCRIPTION FACTOR
AT3G03450	Experimental filter binding	FSW = 0.0228	Class D: nucleus (p = 0.78) cytosol (p = 0.67)	RGL2 (RGA-LIKE 2) TRANSCRIPTION FACTOR
AT2G37560	Experimental far western blotting	FSW = 0.0043	Class D: nucleus (p = 0.78)	ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING
AT2G46240	Experimental far western blotting	FSW = 0.1754	Unknown	BAG6 (BCL-2-ASSOCIATED ATHANOGENE 6) CALMODULIN BINDING / PROTEIN BINDING
AT2G46600	Experimental filter binding	FSW = 0.0367	Unknown	CALCIUM-BINDING PROTEIN PUTATIVE
AT4G35580	Experimental interaction detection method	FSW = 0.0494	Unknown	NTL9 (NAC TRANSCRIPTION FACTOR-LIKE 9) TRANSCRIPTION FACTOR
AT1G12310	Predicted Phylogenetic profile method Co-expression	FSW = 0.6406	Class C: plasma membrane	CALMODULIN PUTATIVE
AT1G76650	Predicted Phylogenetic profile method Co-expression	FSW = 0.7236	Class C: plasma membrane	CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT5G37770	Predicted Phylogenetic profile method Co-expression	FSW = 0.7765	Class C: plasma membrane	TCH2 (TOUCH 2) CALCIUM ION BINDING
AT3G50360	Predicted Phylogenetic profile method	FSW = 0.5974	Class C: plasma membrane	ATCEN2 (CENTRIN2) CALCIUM ION BINDING
AT3G43810	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.2235	Class C: plasma membrane	CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT1G66410	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.2369	Class C: plasma membrane	CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER
AT4G37010	Predicted Phylogenetic profile method	FSW = 0.6806	Unknown	CALTRACTIN PUTATIVE / CENTRIN PUTATIVE
AT4G03290	Predicted Phylogenetic profile method Co-expression	FSW = 0.7649	Unknown	CALCIUM-BINDING PROTEIN PUTATIVE
AT1G62820	Predicted Phylogenetic profile method Co-expression	FSW = 0.7427	Unknown	CALMODULIN PUTATIVE
AT5G37780	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.7536	Unknown	CAM1 (CALMODULIN 1) CALCIUM ION BINDING
AT5G49480	Predicted Phylogenetic profile method Co-expression	FSW = 0.7536	Unknown	ATCP1 (CA2+-BINDING PROTEIN 1) CALCIUM ION BINDING
AT5G45550	Predicted Reconstituted Complex	FSW = 0.0185	Unknown	MOB1/PHOCEIN FAMILY PROTEIN
AT3G03000	Predicted Phylogenetic profile method Co-expression	FSW = 0.7536	Unknown	CALMODULIN PUTATIVE
AT1G08730	Predicted two hybrid	FSW = 0.0494	Unknown	XIC MOTOR/ PROTEIN BINDING
AT3G03400	Predicted Phylogenetic profile method Co-expression	FSW = 0.7765	Unknown	CALMODULIN-RELATED PROTEIN PUTATIVE
AT2G36180	Predicted Phylogenetic profile method Co-expression	FSW = 0.7649	Unknown	CALMODULIN-RELATED PROTEIN PUTATIVE
AT1G76640	Predicted Phylogenetic profile method Co-expression	FSW = 0.7619	Unknown	CALMODULIN-RELATED PROTEIN PUTATIVE
AT1G05990	Predicted Phylogenetic profile method Co-expression	FSW = 0.7765	Unknown	CALCIUM-BINDING PROTEIN PUTATIVE
AT1G18530	Predicted Phylogenetic profile method Co-expression	FSW = 0.7536	Unknown	CALMODULIN PUTATIVE
AT4G12860	Predicted Phylogenetic profile method Co-expression	FSW = 0.7765	Unknown	UNE14 (UNFERTILIZED EMBRYO SAC 14) CALCIUM ION BINDING
AT3G03410	Predicted Phylogenetic profile method Co-expression	FSW = 0.7765	Unknown	CALMODULIN-RELATED PROTEIN PUTATIVE
AT1G32250	Predicted Phylogenetic profile method Co-expression	FSW = 0.7649	Unknown	CALMODULIN PUTATIVE
AT3G51920	Predicted Phylogenetic profile method Co-expression	FSW = 0.2962	Unknown	CAM9 (CALMODULIN 9) CALCIUM ION BINDING
AT3G25600	Predicted Phylogenetic profile method Co-expression	FSW = 0.7765	Unknown	CALCIUM ION BINDING
AT2G41110	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.7792	Unknown	CAM2 (CALMODULIN 2) CALCIUM ION BINDING / PROTEIN BINDING
AT3G56800	Predicted Phylogenetic profile method Co-expression	FSW = 0.7649	Unknown	CAM3 (CALMODULIN 3) CALCIUM ION BINDING
AT1G66400	Predicted Phylogenetic profile method Co-expression	FSW = 0.7536	Unknown	CALMODULIN-RELATED PROTEIN PUTATIVE
AT3G22930	Predicted Phylogenetic profile method Co-expression	FSW = 0.7765	Unknown	CALMODULIN PUTATIVE
AT5G17470	Predicted Phylogenetic profile method Co-expression	FSW = 0.7536	Unknown	CALMODULIN-RELATED PROTEIN PUTATIVE
AT4G14640	Predicted Phylogenetic profile method Co-expression	FSW = 0.3439	Unknown	CAM8 (CALMODULIN 8) CALCIUM ION BINDING
AT3G07490	Predicted Phylogenetic profile method Co-expression	FSW = 0.7765	Unknown	AGD11 (ARF-GAP DOMAIN 11) CALCIUM ION BINDING
AT1G73630	Predicted Phylogenetic profile method Co-expression	FSW = 0.7649	Unknown	CALCIUM-BINDING PROTEIN PUTATIVE
AT5G44460	Predicted Gene fusion method Co-expression	FSW = 0.1350	Unknown	CALCIUM-BINDING PROTEIN PUTATIVE
AT5G21274	Predicted Gene fusion method Phylogenetic profile method	FSW = 0.2891	Unknown	CAM6 (CALMODULIN 6) CALCIUM ION BINDING
AT1G21550	Predicted Phylogenetic profile method	FSW = 0.7427	Unknown	CALCIUM-BINDING PROTEIN PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT2G27030 - ( CAM5 (CALMODULIN 5) calcium ion binding )

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Fasta sequences:

Quick help

FSW

C3

PEP

How to cite