Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G22800 - ( leucine-rich repeat family protein / extensin family protein )
15 Proteins interacs with AT3G22800Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G08920 | PredictedGene fusion method | FSW = 0.1333
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G40000 | PredictedGene fusion method | FSW = 0.2286
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT3G16400 | PredictedGene fusion method | FSW = 0.1390
| Unknown | NSP1 (NITRILE SPECIFIER PROTEIN 1) |
AT3G05150 | PredictedGene fusion method | FSW = 0.1032
| Unknown | SUGAR TRANSPORTER FAMILY PROTEIN |
AT1G12680 | PredictedGene fusion method | FSW = 0.1015
| Unknown | PEPKR2 (PHOSPHOENOLPYRUVATE CARBOXYLASE-RELATED KINASE 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G17730 | PredictedGene fusion method | FSW = 0.2368
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G01450 | PredictedGene fusion method | FSW = 0.0381
| Unknown | PROTEIN KINASE-RELATED |
AT3G49700 | PredictedGene fusion method | FSW = 0.1457
| Unknown | ACS9 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9) 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE |
AT5G24080 | PredictedGene fusion method | FSW = 0.0889
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G02850 | PredictedGene fusion method | FSW = 0.0189
| Unknown | BGLU11 (BETA GLUCOSIDASE 11) CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT1G28390 | PredictedGene fusion method | FSW = 0.1062
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G58940 | PredictedGene fusion method | FSW = 0.2707
| Unknown | CRCK1 (CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G63610 | PredictedGene fusion method | FSW = 0.0103
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G54730 | PredictedGene fusion method | FSW = 0.0970
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G65800 | PredictedGene fusion method | FSW = 0.1184
| Unknown | ACS5 (ACC SYNTHASE 5) 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454