Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G45010 - ( scpl48 (serine carboxypeptidase-like 48) serine-type carboxypeptidase )

6 Proteins interacs with AT3G45010
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G10410

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0863

Unknown

SCPL49 (SERINE CARBOXYPEPTIDASE-LIKE 49) SERINE-TYPE CARBOXYPEPTIDASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0116

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G65040

Predicted

Affinity Capture-Western

FSW = 0.0379

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT2G19170

Predicted

Phenotypic Enhancement

FSW = 0.1498

Unknown

SLP3 SERINE-TYPE PEPTIDASE
AT2G37840

Predicted

biochemical

FSW = 0.0135

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G04460

Predicted

Synthetic Rescue

FSW = 0.3232

Unknown

ASPARTYL PROTEASE FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454