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AT4G39260 - ( GR-RBP8 RNA binding / nucleic acid binding / nucleotide binding )

5 Proteins interacs with AT4G39260

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G21660	Experimental Protein-RNA Protein-RNA	FSW = 0.0585	Class A: plasma membrane peroxisome nucleus Class B: plastid Class D: nucleus (p = 0.78)	CCR2 (COLD CIRCADIAN RHYTHM AND RNA BINDING 2) RNA BINDING / DOUBLE-STRANDED DNA BINDING / SINGLE-STRANDED DNA BINDING
AT5G22290	Experimental pull down	FSW = 0.0588	Class A: nucleus Class B: plastid plasma membrane peroxisome cytosol Class D: nucleus (p = 0.78)	ANAC089 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 89) TRANSCRIPTION FACTOR
AT4G13860	Predicted Phylogenetic profile method	FSW = 0.1233	Class C: nucleus	GLYCINE-RICH RNA-BINDING PROTEIN PUTATIVE
AT5G61530	Predicted two hybrid	FSW = 0.0870	Unknown	SMALL G PROTEIN FAMILY PROTEIN / RHOGAP FAMILY PROTEIN
AT3G46020	Predicted Phylogenetic profile method Co-expression	FSW = 0.1233	Unknown	RNA-BINDING PROTEIN PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT4G39260 - ( GR-RBP8 RNA binding / nucleic acid binding / nucleotide binding )

Class A:

Class B:

Class D: