Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G39830 - ( DEG8 peptidase/ serine-type peptidase )
5 Proteins interacs with AT5G39830| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G18370
   | Experimentalpull down | FSW = 0.0863
| Class A:plastidClass D:plastid (p = 0.78)cytosol (p = 0.67) | DEG5 (DEGP PROTEASE 5) CATALYTIC/ SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE |
| AT5G08710
| PredictedGene fusion method | FSW = 0.4148
| Class C:plastid | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN / UVB-RESISTANCE PROTEIN-RELATED |
| AT1G47500
| PredictedGene fusion method | FSW = 0.2933
| Unknown | ATRBP47C (RNA-BINDING PROTEIN 47C) RNA BINDING |
| AT5G59210
| PredictedGene fusion method | FSW = 0.2500
| Unknown | MYOSIN HEAVY CHAIN-RELATED |
| AT3G16710
| PredictedGene fusion method | FSW = 0.4476
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 10 PLANT STRUCTURES EXPRESSED DURING LP10 TEN LEAVES VISIBLE PETAL DIFFERENTIATION AND EXPANSION STAGE D BILATERAL STAGE E EXPANDED COTYLEDON STAGE CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT5G411701) HAS 25882 BLAST HITS TO 6002 PROTEINS IN 187 SPECIES ARCHAE - 3 BACTERIA - 22 METAZOA - 744 FUNGI - 522 PLANTS - 23419 VIRUSES - 0 OTHER EUKARYOTES - 1172 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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