Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  


AtPIN will be upgraded. Please send your suggestions here

AT1G54770 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Fcf2 pre-rRNA processing (InterProIPR014810) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT5G304952) Has 216 Blast hits to 216 proteins in 112 species Archae - 0 Bacteria - 0 Metazoa - 88 Fungi - 76 Plants - 26 Viruses - 0 Other Eukaryotes - 26 (source NCBI BLink) )

5 Proteins interacs with AT1G54770
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G55860

Predicted

two hybrid

FSW = 0.0606

Unknown

 UPL1 (UBIQUITIN-PROTEIN LIGASE 1) UBIQUITIN-PROTEIN LIGASE
AT5G54260

Predicted

Affinity Capture-MS

FSW = 0.0345

Unknown

 MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G31480

Predicted

Affinity Capture-MS

FSW = 0.0690

Unknown

 COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE
AT1G21920

Predicted

two hybrid

FSW = 0.0745

Unknown

 MORN (MEMBRANE OCCUPATION AND RECOGNITION NEXUS) REPEAT-CONTAINING PROTEIN /PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE-RELATED
AT5G30495

Predicted

Phylogenetic profile method

FSW = 0.1170

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S FCF2 PRE-RRNA PROCESSING (INTERPROIPR014810) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G547701) HAS 218 BLAST HITS TO 218 PROTEINS IN 114 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 88 FUNGI - 76 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 28 (SOURCE NCBI BLINK)

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMP

TAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71

         

This page takes 0.117 seconds to be build.