Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G62590 - ( pentatricopeptide (PPR) repeat-containing protein )
11 Proteins interacs with AT1G62590Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G03910 | PredictedGene fusion method | FSW = 0.4440
| Unknown | ATATH12 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / TRANSPORTER |
AT5G14080 | PredictedGene fusion method | FSW = 0.5653
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT3G18100 | PredictedGene fusion method | FSW = 0.4476
| Unknown | MYB4R1 (MYB DOMAIN PROTEIN 4R1) TRANSCRIPTION FACTOR |
AT5G66760 | PredictedGene fusion method | FSW = 0.0527
| Unknown | SDH1-1 ATP BINDING / SUCCINATE DEHYDROGENASE |
AT4G30600 | PredictedGene fusion method | FSW = 0.2622
| Unknown | SIGNAL RECOGNITION PARTICLE RECEPTOR ALPHA SUBUNIT FAMILY PROTEIN |
AT5G19600 | PredictedGene fusion method | FSW = 0.3980
| Unknown | SULTR35 (SULFATE TRANSPORTER 35) SULFATE TRANSMEMBRANE TRANSPORTER |
AT4G36760 | PredictedGene fusion method | FSW = 0.0697
| Unknown | ATAPP1 N-1-NAPHTHYLPHTHALAMIC ACID BINDING / AMINOPEPTIDASE |
AT3G05130 | PredictedGene fusion method | FSW = 0.9032
| Unknown | UNKNOWN PROTEIN |
AT1G15910 | PredictedGene fusion method | FSW = 0.2297
| Unknown | XH/XS DOMAIN-CONTAINING PROTEIN / XS ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT3G10550 | PredictedGene fusion method | FSW = 0.3456
| Unknown | PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT2G23950 | PredictedGene fusion method | FSW = 0.8021
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN / PROTEIN KINASE FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454