Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G54620 - ( BZIP25 (BASIC LEUCINE ZIPPER 25) protein heterodimerization/ transcription factor )

12 Proteins interacs with AT3G54620
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G32950

Experimental

enzymatic study

FSW = 0.0441

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

 COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G02640

Experimental

two hybrid

FSW = 0.6211

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

 BZO2H1 DNA BINDING / PROTEIN HETERODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT4G34590

Experimental

two hybrid

FSW = 0.4045

Class A:

nucleus

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

 GBF6 (G-BOX BINDING FACTOR 6) DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR
AT2G18160

Experimental

two hybrid

FSW = 0.6772

Class A:

nucleus

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

 ATBZIP2 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 2) DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR
AT1G75390

Experimental

two hybrid

FSW = 0.5240

Class A:

nucleus

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

 ATBZIP44 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 44) DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR
AT5G49450

Experimental

two hybrid

FSW = 0.5455

Class A:

nucleus

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

 ATBZIP1 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 1) DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR
AT2G42380

Experimental

FSW = 0.0482

Class A:

nucleus

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

 BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN
AT5G24800

Experimental

FSW = 0.6403

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 BZIP9 (BASIC LEUCINE ZIPPER 9) DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR
AT5G65210

Experimental

FSW = 0.0970

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 TGA1 DNA BINDING / CALMODULIN BINDING / TRANSCRIPTION FACTOR
AT3G62420

Experimental

two hybrid

interaction detection method

interaction detection method

two hybrid

FSW = 0.6505

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53) DNA BINDING / PROTEIN HETERODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT5G28770

Experimental

FSW = 0.6325

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 BZO2H3 DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR
AT3G24650

Experimental

two hybrid

FSW = 0.2353

Class D:

nucleus (p = 0.78)

 ABI3 (ABA INSENSITIVE 3) DNA BINDING / BASAL TRANSCRIPTION REPRESSOR/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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