Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G42820 - ( U2AF35B RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding )
10 Proteins interacs with AT5G42820Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07350 | Experimentalinteraction detection method | FSW = 0.0504
| Unknown | TRANSFORMER SERINE/ARGININE-RICH RIBONUCLEOPROTEIN PUTATIVE |
AT5G64200 | Predictedin vivoCo-expression | FSW = 0.0896
| Unknown | ATSC35 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G02840 | Predictedin vivoin vivoin vitroin vitroAffinity Capture-MSCo-expression | FSW = 0.0659
| Unknown | SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G77180 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0368
| Unknown | CHROMATIN PROTEIN FAMILY |
AT1G10320 | Predictedin vivoin vitrotwo hybrid | FSW = 0.1977
| Unknown | U2 SNRNP AUXILIARY FACTOR-RELATED |
AT4G36690 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridin vivoin vitroAffinity Capture-MSAffinity Capture-Western | FSW = 0.1789
| Unknown | ATU2AF65A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G60900 | Predictedtwo hybridin vivoin vitroAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1303
| Unknown | U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT PUTATIVE |
AT1G50300 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.1131
| Unknown | TAF15 (TBP-ASSOCIATED FACTOR 15) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT4G02430 | Predictedin vitroin vivoin vivoin vitroAffinity Capture-MS | FSW = 0.1625
| Unknown | PRE-MRNA SPLICING FACTOR PUTATIVE / SR1 PROTEIN PUTATIVE |
AT5G16260 | PredictedAffinity Capture-Western | FSW = 0.0896
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454