Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G54826 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown CONTAINS InterPro DOMAIN/s Zinc finger Zim17-type (InterProIPR007853) Has 284 Blast hits to 284 proteins in 134 species Archae - 0 Bacteria - 0 Metazoa - 100 Fungi - 79 Plants - 58 Viruses - 0 Other Eukaryotes - 47 (source NCBI BLink) )

8 Proteins interacs with AT3G54826
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G09590

Predicted

two hybrid

Affinity Capture-Western

two hybrid

interologs mapping

Affinity Capture-MS

Affinity Capture-Western

Co-purification

Reconstituted Complex

FSW = 0.0214

Class C:

mitochondrion

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT4G37910

Predicted

Affinity Capture-Western

interologs mapping

FSW = 0.0231

Class C:

mitochondrion

MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT2G43400

Predicted

two hybrid

two hybrid

FSW = 0.1025

Class C:

mitochondrion

ETFQO (ELECTRON-TRANSFER FLAVOPROTEINUBIQUINONE OXIDOREDUCTASE) CATALYTIC/ ELECTRON CARRIER/ ELECTRON-TRANSFERRING-FLAVOPROTEIN DEHYDROGENASE
AT1G62800

Predicted

Synthetic Rescue

Synthetic Rescue

FSW = 0.0476

Unknown

ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS
AT5G03450

Predicted

two hybrid

FSW = 0.0504

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT2G26000

Predicted

Affinity Capture-MS

FSW = 0.1015

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT2G32415

Predicted

Affinity Capture-MS

FSW = 0.0275

Unknown

3-5 EXONUCLEASE/ NUCLEIC ACID BINDING
AT4G17610

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-fractionation

Reconstituted Complex

FSW = 0.0556

Unknown

TRNA/RRNA METHYLTRANSFERASE (SPOU) FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454