Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G02220 - ( zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein )
8 Proteins interacs with AT4G02220| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G42570
   | Predictedtwo hybrid | FSW = 0.0697
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR PROTEIN TRANSPORT LOCATED IN ENDOPLASMIC RETICULUM PLASMA MEMBRANE EXPRESSED IN 26 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S B-CELL RECEPTOR-ASSOCIATED 31-LIKE (INTERPROIPR008417) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G119051) HAS 311 BLAST HITS TO 268 PROTEINS IN 81 SPECIES ARCHAE - 2 BACTERIA - 2 METAZOA - 134 FUNGI - 41 PLANTS - 73 VIRUSES - 0 OTHER EUKARYOTES - 59 (SOURCE NCBI BLINK) |
| AT3G52250
| Predictedin vivo | FSW = 0.0195
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G65700
| Predictedtwo hybrid | FSW = 0.0275
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT3G48470
| PredictedPhenotypic Enhancement | FSW = 0.0245
| Unknown | EMB2423 (EMBRYO DEFECTIVE 2423) |
| AT3G57490
| Predictedtwo hybridtwo hybrid | FSW = 0.0482
| Unknown | 40S RIBOSOMAL PROTEIN S2 (RPS2D) |
| AT1G70060 | Predictedin vivo | FSW = 0.0504
| Unknown | SNL4 (SIN3-LIKE 4) |
| AT2G36360
| Predictedin vivoin vitrotwo hybrid | FSW = 0.1233
| Unknown | KELCH REPEAT-CONTAINING PROTEIN |
| AT5G15020
| Predictedin vivo | FSW = 0.1698
| Unknown | SNL2 (SIN3-LIKE 2) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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