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AT4G35000 - ( APX3 (ASCORBATE PEROXIDASE 3) L-ascorbate peroxidase )

5 Proteins interacs with AT4G35000

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G10450	Experimental two hybrid	FSW = 0.0194	Class A: plastid peroxisome Class B: vacuole unclear plasma membrane nucleus mitochondrion cytosol Class D: cytosol (p = 0.67)	GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G35450	Experimental Affinity Capture-Western Affinity Capture-Western two hybrid two hybrid	FSW = 0.0527	Unknown	AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) PROTEIN BINDING
AT3G09440	Predicted Affinity Capture-MS	FSW = 0.0216	Class C: vacuole	HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3)
AT3G62870	Predicted synthetic growth defect	FSW = 0.0031	Class C: vacuole	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT4G35970	Predicted Phylogenetic profile method Co-expression	FSW = 0.1233	Unknown	APX5 (ASCORBATE PEROXIDASE 5) L-ASCORBATE PEROXIDASE/ HEME BINDING / PEROXIDASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT4G35000 - ( APX3 (ASCORBATE PEROXIDASE 3) L-ascorbate peroxidase )

Class A:

Class B:

Class D:

Unknown

Class C: