Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G38440 - ( LOCATED IN chloroplast EXPRESSED IN 21 plant structures EXPRESSED DURING 12 growth stages CONTAINS InterPro DOMAIN/s RNA polymerase II-associated protein 1 C-terminal (InterProIPR013929) RNA polymerase II-associated protein 1 N-terminal (InterProIPR013930) Has 210 Blast hits to 166 proteins in 68 species Archae - 0 Bacteria - 2 Metazoa - 135 Fungi - 41 Plants - 22 Viruses - 0 Other Eukaryotes - 10 (source NCBI BLink) )

4 Proteins interacs with AT4G38440
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G02780

Predicted

Reconstituted Complex

FSW = 0.0164

Unknown

 EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G16420

Predicted

two hybrid

FSW = 0.0071

Unknown

 ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT5G25800

Predicted

two hybrid

FSW = 0.0653

Unknown

 EXONUCLEASE FAMILY PROTEIN
AT5G53300

Predicted

Phenotypic Enhancement

FSW = 0.0544

Unknown

 UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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