Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G63320 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 24 plant structures EXPRESSED DURING 14 growth stages CONTAINS InterPro DOMAIN/s Bromodomain (InterProIPR001487) BEST Arabidopsis thaliana protein match is ATBET9 (Arabidopsis thaliana Bromodomain and Extraterminal Domain protein 9) DNA binding (TAIRAT5G142701) Has 44558 Blast hits to 24285 proteins in 1236 species Archae - 185 Bacteria - 3450 Metazoa - 19774 Fungi - 4003 Plants - 1404 Viruses - 349 Other Eukaryotes - 15393 (source NCBI BLink) )

7 Proteins interacs with AT5G63320
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G24590

Experimental

two hybrid

FSW = 0.1262

Unknown

 TIP (TCV-INTERACTING PROTEIN) TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT2G47990

Predicted

Gene fusion method

FSW = 0.0613

Unknown

 SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT4G12400

Predicted

Gene fusion method

FSW = 0.4506

Unknown

 STRESS-INDUCIBLE PROTEIN PUTATIVE
AT2G41860

Predicted

Gene fusion method

FSW = 0.1481

Unknown

 CPK14 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G56310

Predicted

Gene fusion method

FSW = 0.3401

Unknown

 PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G58260

Predicted

Gene fusion method

FSW = 0.1861

Unknown

 CYP79C2 (CYTOCHROME P450 79C2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING
AT2G46660

Predicted

Gene fusion method

FSW = 0.1955

Unknown

 CYP78A6 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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