Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G26000 - ( zinc finger (C3HC4-type RING finger) family protein )
15 Proteins interacs with AT2G26000Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07770 | Predictedtwo hybridtwo hybrid | FSW = 0.0274
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0043
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G06530 | Predictedinterologs mappingCo-purification | FSW = 0.1185
| Unknown | VPS21 |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0066
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G18800 | Predictedinterologs mapping | FSW = 0.0147
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT3G54826 | PredictedAffinity Capture-MS | FSW = 0.1015
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S ZINC FINGER ZIM17-TYPE (INTERPROIPR007853) HAS 284 BLAST HITS TO 284 PROTEINS IN 134 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 100 FUNGI - 79 PLANTS - 58 VIRUSES - 0 OTHER EUKARYOTES - 47 (SOURCE NCBI BLINK) |
AT1G62800 | PredictedSynthetic Rescue | FSW = 0.0416
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT5G59850 | Predictedtwo hybrid | FSW = 0.0351
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AF) |
AT1G60940 | Predictedsynthetic growth defect | FSW = 0.1111
| Unknown | SNRK210 (SNF1-RELATED PROTEIN KINASE 210) KINASE |
AT5G11920 | PredictedAffinity Capture-WesternAffinity Capture-WesternSynthetic Lethality | FSW = 0.0902
| Unknown | ATCWINV6 (6-&1-FRUCTAN EXOHYDROLASE) HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / INULINASE/ LEVANASE |
AT2G31510 | PredictedAffinity Capture-MS | FSW = 0.0832
| Unknown | IBR DOMAIN-CONTAINING PROTEIN / ARIADNE-LIKE PROTEIN ARI7 (ARI7) |
AT2G40110 | PredictedAffinity Capture-MS | FSW = 0.1524
| Unknown | YIPPEE FAMILY PROTEIN |
AT1G05890 | PredictedAffinity Capture-MS | FSW = 0.0988
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT4G27740 | PredictedAffinity Capture-MS | FSW = 0.1184
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S YIPPEE-LIKE PROTEIN (INTERPROIPR004910) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G277451) HAS 684 BLAST HITS TO 682 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 389 FUNGI - 132 PLANTS - 111 VIRUSES - 0 OTHER EUKARYOTES - 52 (SOURCE NCBI BLINK) |
AT2G42160 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0677
| Unknown | ZINC FINGER (UBIQUITIN-HYDROLASE) DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454