Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G12360 - ( ITN1 (INCREASED TOLERANCE TO NACL) protein binding )
19 Proteins interacs with AT3G12360Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G17120 | PredictedGene fusion method | FSW = 0.1214
| Class C:plasma membrane | CAT8 (CATIONIC AMINO ACID TRANSPORTER 8) BASIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ CATIONIC AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT5G02620 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1333
| Class C:plasma membrane | ANKYRIN REPEAT FAMILY PROTEIN |
AT2G01680 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1667
| Class C:plasma membrane | ANKYRIN REPEAT FAMILY PROTEIN |
AT1G12110 | PredictedGene fusion method | FSW = 0.0391
| Class C:plasma membrane | NRT11 NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT3G59040 | PredictedGene fusion methodCo-expression | FSW = 0.3853
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT5G65630 | PredictedGene fusion method | FSW = 0.4260
| Unknown | GTE7 (GLOBAL TRANSCRIPTION FACTOR GROUP E 7) DNA BINDING |
AT5G60070 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2353
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT2G46050 | PredictedGene fusion methodCo-expression | FSW = 0.3025
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT5G59200 | PredictedGene fusion methodCo-expression | FSW = 0.4840
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G63070 | PredictedGene fusion methodCo-expression | FSW = 0.4582
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT3G09550 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1818
| Unknown | PROTEIN BINDING |
AT1G53270 | PredictedGene fusion method | FSW = 0.2518
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT1G66530 | PredictedGene fusion method | FSW = 0.0381
| Unknown | ARGINYL-TRNA SYNTHETASE PUTATIVE / ARGININE--TRNA LIGASE PUTATIVE |
AT1G62200 | PredictedGene fusion method | FSW = 0.0505
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G34120 | PredictedGene fusion method | FSW = 0.0345
| Unknown | IP5PI (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I) INOSITOL TRISPHOSPHATE PHOSPHATASE/ INOSITOL-POLYPHOSPHATE 5-PHOSPHATASE |
AT3G12380 | PredictedGene fusion method | FSW = 0.1404
| Unknown | ATARP5 (ACTIN-RELATED PROTEIN 5) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G41220 | PredictedGene fusion method | FSW = 0.1818
| Unknown | ATGSTT3 (GLUTATHIONE S-TRANSFERASE THETA 3) GLUTATHIONE TRANSFERASE |
AT3G49150 | PredictedGene fusion method | FSW = 0.1818
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN PROTEIN INSERTION INTO MEMBRANE LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S CYCLIN-LIKE F-BOX (INTERPROIPR001810) FBD-LIKE (INTERPROIPR006566) 60 KDA INNER MEMBRANE INSERTION PROTEIN (INTERPROIPR001708) LEUCINE-RICH REPEAT 2 (INTERPROIPR013101) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS F-BOX FAMILY PROTEIN (TAIRAT3G592401) HAS 1228 BLAST HITS TO 1197 PROTEINS IN 21 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 27 FUNGI - 2 PLANTS - 1199 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK) |
AT3G12270 | PredictedGene fusion method | FSW = 0.0345
| Unknown | PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3) METHYLTRANSFERASE/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454