Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G38670 - ( PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1) ethanolamine-phosphate cytidylyltransferase )
15 Proteins interacs with AT2G38670Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G03070 | Predictedtwo hybridtwo hybrid | FSW = 0.0395
| Class C:mitochondrion | NADH-UBIQUINONE OXIDOREDUCTASE-RELATED |
AT2G02040 | Predictedtwo hybrid | FSW = 0.1067
| Unknown | PTR2 (PEPTIDE TRANSPORTER 2) DIPEPTIDE TRANSPORTER/ HIGH AFFINITY OLIGOPEPTIDE TRANSPORTER/ NITRATE TRANSMEMBRANE TRANSPORTER/ PEPTIDE TRANSPORTER/ TRANSPORTER/ TRIPEPTIDE TRANSPORTER |
AT1G12310 | Predictedtwo hybrid | FSW = 0.0379
| Unknown | CALMODULIN PUTATIVE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0026
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G20810 | Predictedtwo hybrid | FSW = 0.0381
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN |
AT5G26980 | Predictedtwo hybridtwo hybrid | FSW = 0.0342
| Unknown | SYP41 (SYNTAXIN OF PLANTS 41) SNAP RECEPTOR |
AT1G76400 | PredictedAffinity Capture-MS | FSW = 0.0165
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT3G25980 | Predictedtwo hybrid | FSW = 0.0129
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT2G47990 | Predictedtwo hybridtwo hybrid | FSW = 0.0105
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT3G49100 | Predictedtwo hybridtwo hybrid | FSW = 0.0426
| Unknown | SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN PUTATIVE / SRP9 PUTATIVE |
AT1G62200 | Predictedtwo hybrid | FSW = 0.1000
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G13400 | Predictedtwo hybrid | FSW = 0.0696
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G21274 | Predictedtwo hybrid | FSW = 0.0122
| Unknown | CAM6 (CALMODULIN 6) CALCIUM ION BINDING |
AT3G11270 | Predictedinterologs mapping | FSW = 0.0146
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT4G33100 | Predictedinterologs mapping | FSW = 0.0404
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MITOCHONDRIAL DISTRIBUTION AND MORPHOLOGY FAMILY 35/APOPTOSIS (INTERPROIPR007918) HAS 160 BLAST HITS TO 160 PROTEINS IN 70 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 46 PLANTS - 13 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454