Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G15800 - ( SEP1 (SEPALLATA1) DNA binding / transcription factor )

18 Proteins interacs with AT5G15800
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G24540

Experimental

two hybrid

FSW = 0.5630

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

 AGL24 (AGAMOUS-LIKE 24) PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT1G69120

Experimental

two hybrid

FSW = 0.4487

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

 AP1 (APETALA1) DNA BINDING / PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT5G51870

Experimental

two hybrid

FSW = 0.2778

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 AGL71 (AGAMOUS-LIKE 71) TRANSCRIPTION FACTOR
AT3G57230

Experimental

two hybrid

FSW = 0.6421

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 AGL16 (AGAMOUS-LIKE 16) TRANSCRIPTION FACTOR
AT5G23260

Experimental

two hybrid

two hybrid

FSW = 0.3831

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 TT16 (TRANSPARENT TESTA16) TRANSCRIPTION FACTOR
AT4G09960

Experimental

two hybrid

FSW = 0.4821

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 STK (SEEDSTICK) PROTEIN BINDING / TRANSCRIPTION FACTOR
AT5G20240

Experimental

two hybrid

FSW = 0.2604

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 PI (PISTILLATA) DNA BINDING / TRANSCRIPTION FACTOR
AT4G18960

Experimental

two hybrid

two hybrid

Reconstituted Complex

FSW = 0.4801

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 AG (AGAMOUS) DNA BINDING / TRANSCRIPTION FACTOR
AT2G42830

Experimental

two hybrid

FSW = 0.3590

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 SHP2 (SHATTERPROOF 2) PROTEIN BINDING / TRANSCRIPTION FACTOR
AT4G37940

Experimental

two hybrid

FSW = 0.5402

Class A:

nucleus

Class D:

cytosol (p = 0.67)

 AGL21 TRANSCRIPTION FACTOR
AT1G71692

Experimental

two hybrid

FSW = 0.4741

Class B:

unclear

nucleus

Class D:

cytosol (p = 0.67)

 AGL12 (AGAMOUS-LIKE 12) TRANSCRIPTION FACTOR
AT2G22540

Experimental

two hybrid

FSW = 0.4424

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

 SVP (SHORT VEGETATIVE PHASE) TRANSCRIPTION FACTOR/ TRANSLATION REPRESSOR NUCLEIC ACID BINDING
AT3G58780

Experimental

two hybrid

FSW = 0.6649

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

 SHP1 (SHATTERPROOF 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT2G45650

Experimental

two hybrid

FSW = 0.5520

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

 AGL6 (AGAMOUS-LIKE 6) DNA BINDING / TRANSCRIPTION FACTOR
AT3G54340

Experimental

3 hybrid method

FSW = 0.1977

Class D:

nucleus (p = 0.78)

 AP3 (APETALA 3) DNA BINDING / TRANSCRIPTION FACTOR
AT5G60910

Experimental

two hybrid

FSW = 0.4310

Class D:

nucleus (p = 0.78)

 AGL8 (AGAMOUS-LIKE 8) TRANSCRIPTION FACTOR
AT2G45660

Experimental

two hybrid

FSW = 0.5525

Class D:

nucleus (p = 0.78)

 AGL20 (AGAMOUS-LIKE 20) TRANSCRIPTION FACTOR
AT5G62165

Experimental

two hybrid

FSW = 0.5997

Unknown

 AGL42 (AGAMOUS LIKE 42) TRANSCRIPTION FACTOR

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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