Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G22770 - ( GI (GIGANTEA) )
16 Proteins interacs with AT1G22770Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G57360 | Experimentaltwo hybridpull downReconstituted ComplexAffinity Capture-WesternPhenotypic Enhancementaffinity technologyin vitro | FSW = 0.1420
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | ZTL (ZEITLUPE) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G18915 | Experimentalpull downReconstituted Complextwo hybridin vitro | FSW = 0.2094
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | LKP2 (LOV KELCH PROTEIN 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G32950 | ExperimentalPhenotypic Suppressionprotein complementation assaysplit-reporter assay | FSW = 0.0586
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G15840 | ExperimentalDosage Growth Defect | FSW = 0.2695
| Class A:nucleusClass D:nucleus (p = 0.78) | CO (CONSTANS) TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT1G01060 | ExperimentalDosage Growth DefectPhenotypic Suppression | FSW = 0.1559
| Class A:nucleusClass D:nucleus (p = 0.78) | LHY (LATE ELONGATED HYPOCOTYL) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G61380 | ExperimentalPhenotypic Enhancement | FSW = 0.2475
| Class A:nucleusClass D:nucleus (p = 0.78) | TOC1 (TIMING OF CAB EXPRESSION 1) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT3G11540 | Experimentaltwo hybridin vitroReconstituted Complexpull downSynthetic Rescue | FSW = 0.1296
| Class A:nucleus | SPY (SPINDLY) PROTEIN N-ACETYLGLUCOSAMINYLTRANSFERASE/ PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT5G62430 | Experimentalcoimmunoprecipitationpull downAffinity Capture-Westernaffinity technology | FSW = 0.1296
| Class D:nucleus (p = 0.78) | CDF1 (CYCLING DOF FACTOR 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT1G65480 | ExperimentalDosage Growth Defect | FSW = 0.1451
| Class D:nucleus (p = 0.78) | FT (FLOWERING LOCUS T) PHOSPHATIDYLETHANOLAMINE BINDING / PROTEIN BINDING |
AT2G25930 | Experimentaltwo hybridprotein complementation assaysplit-reporter assay | FSW = 0.4083
| Class D:nucleus (p = 0.78) | ELF3 (EARLY FLOWERING 3) PROTEIN C-TERMINUS BINDING / TRANSCRIPTION FACTOR |
AT1G68050 | Experimentalin vitrocoimmunoprecipitationtwo hybridReconstituted Complexpull downtwo hybridAffinity Capture-Westernin vitroaffinity technology | FSW = 0.1894
| Unknown | FKF1 (FLAVIN-BINDING KELCH REPEAT F BOX 1) SIGNAL TRANSDUCER/ TWO-COMPONENT SENSOR/ UBIQUITIN-PROTEIN LIGASE |
AT4G16360 | Experimental | FSW = 0.0172
| Unknown | AMP-ACTIVATED PROTEIN KINASE |
AT1G27360 | ExperimentalReconstituted Complexin vitro | FSW = 0.0368
| Unknown | SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE 11 (SPL11) |
AT2G47700 | ExperimentalPhenotypic EnhancementPhenotypic Suppression | FSW = 0.3000
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G77300 | ExperimentalPhenotypic Suppression | FSW = 0.1800
| Unknown | EFS (EARLY FLOWERING IN SHORT DAYS) HISTONE METHYLTRANSFERASE(H3-K36 SPECIFIC) / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT3G22380 | ExperimentalPhenotypic Enhancement | FSW = 0.3788
| Unknown | TIC (TIME FOR COFFEE) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454