Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G26670 - ( VTI1B SNARE binding / receptor/ soluble NSF attachment protein )
19 Proteins interacs with AT1G26670Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G43160 | ExperimentalReconstituted Complexin vitro | FSW = 0.0242
| Class A:plasma membraneClass B:vacuoleClass D:nucleus (p = 0.78) | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT2G35190 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.0368
| Class A:plasma membraneClass D:nucleus (p = 0.78)golgi (p = 0.04) | NPSN11 (NOVEL PLANT SNARE 11) SNAP RECEPTOR/ PROTEIN TRANSPORTER |
AT5G46860 | ExperimentalAffinity Capture-Western | FSW = 0.1905
| Class B:vacuoleplasma membraneendoplasmic reticulumClass D:nucleus (p = 0.78) | VAM3 SNAP RECEPTOR |
AT5G26980 | ExperimentalAffinity Capture-WesternReconstituted Complexcoimmunoprecipitation | FSW = 0.2857
| Class B:plasma membranegolgiendoplasmic reticulumClass D:nucleus (p = 0.78) | SYP41 (SYNTAXIN OF PLANTS 41) SNAP RECEPTOR |
AT1G28490 | ExperimentalAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.3529
| Class B:plasma membranegolgiendoplasmic reticulumClass D:golgi (p = 0.04) | SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR |
AT4G02195 | Experimentalcoimmunoprecipitation | FSW = 0.3956
| Class D:nucleus (p = 0.78) | SYP42 (SYNTAXIN OF PLANTS 42) SNAP RECEPTOR |
AT1G77140 | Experimentalcoimmunoprecipitation | FSW = 0.3123
| Unknown | VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER |
AT3G56190 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Western | FSW = 0.1860
| Class C:plasma membrane | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT5G39510 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.4737
| Unknown | SGR4 (SHOOT GRAVITROPSIM 4) RECEPTOR |
AT2G25340 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternEnriched domain pairCo-expression | FSW = 0.2308
| Unknown | ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712) |
AT5G58060 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSinterologs mappingReconstituted Complex | FSW = 0.5079
| Unknown | YKT61 |
AT3G24350 | PredictedReconstituted Complexinterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mappingReconstituted ComplexEnriched domain pairCo-expression | FSW = 0.1926
| Unknown | SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR |
AT3G05710 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexEnriched domain pairCo-expression | FSW = 0.0854
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT5G39630 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1455
| Unknown | VESICLE TRANSPORT V-SNARE FAMILY PROTEIN |
AT5G20350 | PredictedAffinity Capture-MS | FSW = 0.1159
| Unknown | TIP1 (TIP GROWTH DEFECTIVE 1) S-ACYLTRANSFERASE/ ACYL BINDING |
AT1G32270 | Predictedtwo hybridtwo hybridinterologs mappingAffinity Capture-Westerninterologs mappingReconstituted ComplexEnriched domain pairCo-expression | FSW = 0.2857
| Unknown | ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING |
AT5G13060 | PredictedAffinity Capture-Western | FSW = 0.0505
| Unknown | ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1) PROTEIN BINDING |
AT1G16225 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternReconstituted Complex | FSW = 0.2637
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN CONTAINS INTERPRO DOMAIN/S TARGET SNARE COILED-COIL REGION (INTERPROIPR000727) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SYNTAXIN-RELATED FAMILY PROTEIN (TAIRAT1G162301) HAS 85 BLAST HITS TO 85 PROTEINS IN 27 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 22 PLANTS - 56 VIRUSES - 0 OTHER EUKARYOTES - 7 (SOURCE NCBI BLINK) |
AT2G17980 | Predictedinterologs mapping | FSW = 0.1497
| Unknown | ATSLY1 PROTEIN TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454