Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT3G01390 - ( VMA10 (VACUOLAR MEMBRANE ATPASE 10) hydrogen ion transporting ATP synthase rotational mechanism )

17 Proteins interacs with AT3G01390
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G35410

Experimental

interaction detection method

FSW = 0.0746

Unknown

SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE
AT3G42050

Predicted

Affinity Capture-MS

FSW = 0.3647

Class C:

vacuole

plasma membrane

VACUOLAR ATP SYNTHASE SUBUNIT H FAMILY PROTEIN
AT1G78900

Predicted

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.1667

Class C:

vacuole

plasma membrane

VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT4G02620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

co-fractionation

Co-fractionation

FSW = 0.4768

Class C:

vacuole

plasma membrane

VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN
AT3G58730

Predicted

Affinity Capture-MS

co-fractionation

Co-fractionation

FSW = 0.2553

Class C:

vacuole

plasma membrane

VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD)
AT2G21410

Predicted

Affinity Capture-Western

FSW = 0.3529

Class C:

vacuole

VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPASE
AT1G20260

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.1190

Class C:

vacuole

HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT4G23710

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4612

Class C:

vacuole

VAG2 HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G64200

Predicted

Affinity Capture-Western

co-fractionation

Co-fractionation

Reconstituted Complex

FSW = 0.4000

Class C:

vacuole

VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT1G28060

Predicted

Affinity Capture-MS

FSW = 0.0133

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN
AT2G27750

Predicted

Affinity Capture-MS

FSW = 0.1143

Unknown

NUCLEOLAR MATRIX PROTEIN-RELATED
AT2G22290

Predicted

Synthetic Lethality

FSW = 0.0356

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT3G25100

Predicted

Synthetic Lethality

FSW = 0.0099

Unknown

CDC45 (CELL DIVISION CYCLE 45)
AT3G18430

Predicted

Synthetic Lethality

FSW = 0.1452

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT1G54140

Predicted

Synthetic Lethality

FSW = 0.0067

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT2G21270

Predicted

two hybrid

FSW = 0.0857

Unknown

UBIQUITIN FUSION DEGRADATION UFD1 FAMILY PROTEIN
AT4G25950

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0245

Unknown

VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454