Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G50060 - ( pathogenesis-related protein putative )
21 Proteins interacs with AT1G50060Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G14580 | PredictedGene fusion methodCo-expression | FSW = 0.0487
| Class C:extracellular | ATPRB1 |
AT2G14610 | PredictedGene fusion methodCo-expression | FSW = 0.0903
| Class C:extracellular | PR1 (PATHOGENESIS-RELATED GENE 1) |
AT4G30320 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2179
| Class C:extracellular | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G19690 | PredictedGene fusion methodCo-expression | FSW = 0.2179
| Class C:extracellular | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G63400 | PredictedAffinity Capture-MS | FSW = 0.0817
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT1G23740 | PredictedAffinity Capture-MS | FSW = 0.6237
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT4G33090 | PredictedAffinity Capture-MS | FSW = 0.0850
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT4G23700 | PredictedAffinity Capture-MS | FSW = 0.6599
| Unknown | ATCHX17 (CATION/H+ EXCHANGER 17) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT2G29140 | PredictedAffinity Capture-MS | FSW = 0.6438
| Unknown | APUM3 (ARABIDOPSIS PUMILIO 3) RNA BINDING / BINDING |
AT1G07180 | PredictedAffinity Capture-MS | FSW = 0.2865
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT4G28220 | PredictedAffinity Capture-MS | FSW = 0.6757
| Unknown | NDB1 (NAD(P)H DEHYDROGENASE B1) NADH DEHYDROGENASE/ DISULFIDE OXIDOREDUCTASE |
AT4G16420 | PredictedSynthetic Lethality | FSW = 0.0045
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0059
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G68310 | PredictedAffinity Capture-MS | FSW = 0.4132
| Unknown | VACUOLAR SORTING SIGNAL BINDING |
AT3G52560 | PredictedAffinity Capture-MS | FSW = 0.0903
| Unknown | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G60860 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2447
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT4G22756 | PredictedAffinity Capture-MS | FSW = 0.3765
| Unknown | SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE/ CATALYTIC |
AT5G44635 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2926
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT2G31760 | PredictedAffinity Capture-MS | FSW = 0.5435
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT3G08910 | PredictedAffinity Capture-MS | FSW = 0.4840
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT5G56510 | PredictedAffinity Capture-MS | FSW = 0.6599
| Unknown | APUM12 (ARABIDOPSIS PUMILIO 12) RNA BINDING / BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454