Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G17140 - ( tropomyosin-related )
26 Proteins interacs with AT1G17140Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G51300 | Experimentaltwo hybridfluorescence acceptor donor pairfluorescence acceptor donor pair | FSW = 0.0344
| Unknown | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING |
AT2G33460 | ExperimentalAffinity Capture-Western | FSW = 0.0595
| Unknown | RIC1 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1) PROTEIN BINDING |
AT4G33360 | PredictedGene fusion method | FSW = 0.1714
| Unknown | TERPENE CYCLASE/MUTASE-RELATED |
AT4G04910 | PredictedPhenotypic Suppression | FSW = 0.0074
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G12110 | PredictedCo-purificationinterologs mappingSynthetic Rescue | FSW = 0.0530
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G34580 | PredictedPhenotypic Suppression | FSW = 0.0141
| Unknown | COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT5G52640 | Predictedtwo hybrid | FSW = 0.0149
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G09900 | PredictedPhenotypic Suppression | FSW = 0.0265
| Unknown | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
AT1G71820 | PredictedPhenotypic Suppression | FSW = 0.0293
| Unknown | SEC6 |
AT3G43810 | PredictedReconstituted Complex | FSW = 0.0196
| Unknown | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT3G63260 | PredictedGene fusion method | FSW = 0.1500
| Unknown | ATMRK1 KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT1G78430 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2000
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 16 PLANT STRUCTURES EXPRESSED DURING 8 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TROPOMYOSIN-RELATED (TAIRAT1G171402) HAS 36552 BLAST HITS TO 19717 PROTEINS IN 1278 SPECIES ARCHAE - 377 BACTERIA - 3766 METAZOA - 19812 FUNGI - 2701 PLANTS - 1105 VIRUSES - 197 OTHER EUKARYOTES - 8594 (SOURCE NCBI BLINK) |
AT5G11170 | PredictedGene fusion method | FSW = 0.0204
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G04160 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0779
| Unknown | XIB (MYOSIN XI B) MOTOR |
AT1G03150 | PredictedSynthetic Rescue | FSW = 0.0571
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN |
AT1G73570 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0573
| Unknown | SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED |
AT5G07760 | Predictedinterologs mapping | FSW = 0.0545
| Unknown | FORMIN HOMOLOGY 2 DOMAIN-CONTAINING PROTEIN / FH2 DOMAIN-CONTAINING PROTEIN |
AT5G09230 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
AT5G09740 | PredictedSynthetic Lethality | FSW = 0.0215
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G10390 | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | HISTONE H3 |
AT5G66100 | PredictedSynthetic Lethalityinterologs mapping | FSW = 0.0167
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
AT3G01340 | PredictedPhenotypic Suppression | FSW = 0.0172
| Unknown | PROTEIN TRANSPORT PROTEIN SEC13 FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G55090 | PredictedPhenotypic Suppression | FSW = 0.0429
| Unknown | MAPKKK15 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G10810 | PredictedGene fusion method | FSW = 0.0230
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT5G67080 | PredictedGene fusion method | FSW = 0.2000
| Unknown | MAPKKK19 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G42550 | PredictedGene fusion method | FSW = 0.2581
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454