Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G17420 - ( NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) thioredoxin-disulfide reductase )
27 Proteins interacs with AT2G17420Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G24170 | Predictedinterologs mappingEnriched domain pair | FSW = 0.0410
| Class C:peroxisome | ATGR1 (GLUTATHIONE-DISULFIDE REDUCTASE) FAD BINDING / NADP OR NADPH BINDING / GLUTATHIONE-DISULFIDE REDUCTASE/ OXIDOREDUCTASE |
AT1G23190 | Predictedtwo hybrid | FSW = 0.0283
| Unknown | PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE |
AT3G15710 | Predictedinterologs mappingAffinity Capture-Westernsynthetic growth defect | FSW = 0.2567
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
AT2G04940 | Predictedtwo hybrid | FSW = 0.0247
| Unknown | SCRAMBLASE-RELATED |
AT4G35460 | PredictedPhylogenetic profile method | FSW = 0.2647
| Unknown | NTRB (NADPH-DEPENDENT THIOREDOXIN REDUCTASE B) THIOREDOXIN-DISULFIDE REDUCTASE |
AT5G53480 | Predictedtwo hybrid | FSW = 0.0141
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT4G35020 | PredictedPhenotypic Suppression | FSW = 0.0069
| Unknown | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT1G06960 | PredictedSynthetic Rescuesynthetic growth defect | FSW = 0.0646
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT2G04750 | PredictedAffinity Capture-MS | FSW = 0.0342
| Unknown | FIMBRIN-LIKE PROTEIN PUTATIVE |
AT3G14290 | Predictedtwo hybrid | FSW = 0.1451
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0353
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G13950 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybridSynthetic Lethality | FSW = 0.1619
| Unknown | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR |
AT1G77780 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybridinterologs mappingSynthetic Lethality | FSW = 0.4000
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT1G70290 | Predictedbiochemical | FSW = 0.0433
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT3G11290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2036
| Unknown | UNKNOWN PROTEIN |
AT3G13060 | PredictedAffinity Capture-MS | FSW = 0.0387
| Unknown | ECT5 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S YT521-B-LIKE PROTEIN (INTERPROIPR007275) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ECT2 PROTEIN BINDING (TAIRAT3G134601) HAS 1007 BLAST HITS TO 965 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 8 METAZOA - 528 FUNGI - 103 PLANTS - 235 VIRUSES - 0 OTHER EUKARYOTES - 133 (SOURCE NCBI BLINK) |
AT3G24010 | PredictedAffinity Capture-WesternSynthetic Rescue | FSW = 0.1051
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G53030 | PredictedAffinity Capture-WesternAffinity Capture-Westernsynthetic growth defectSynthetic Rescue | FSW = 0.1003
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT4G04700 | PredictedAffinity Capture-MS | FSW = 0.0467
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G04800 | Predictedtwo hybrid | FSW = 0.0799
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT3G27580 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | ATPK7 KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G59490 | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT4G03430 | PredictedAffinity Capture-MS | FSW = 0.0509
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT2G15790 | PredictedAffinity Capture-MS | FSW = 0.0223
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT1G54290 | PredictedAffinity Capture-MS | FSW = 0.0225
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G02690 | Predictedtwo hybrid | FSW = 0.0097
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454