Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G21410 - ( VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPase )
24 Proteins interacs with AT2G21410Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G39080 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1471
| Class C:vacuoleplastid | VHA-A3 (VACUOLAR PROTON ATPASE A3) ATPASE |
AT1G76030 | PredictedAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-MSinteraction prediction | FSW = 0.2689
| Class C:vacuoleplastid | VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT |
AT1G78900 | Predictedtwo hybridco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MStwo hybridtwo hybridAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-MSinteraction prediction | FSW = 0.2885
| Class C:vacuoleplastid | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G42050 | PredictedReconstituted Complexco-fractionationCo-fractionationAffinity Capture-WesternReconstituted ComplexAffinity Capture-Westernco-fractionationCo-fractionationinteraction prediction | FSW = 0.4481
| Class C:vacuoleplastid | VACUOLAR ATP SYNTHASE SUBUNIT H FAMILY PROTEIN |
AT1G20260 | PredictedAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.1111
| Class C:vacuoleplastid | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT1G12840 | Predictedco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationinteraction prediction | FSW = 0.2873
| Class C:vacuole | DET3 (DE-ETIOLATED 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G28715 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationinteraction prediction | FSW = 0.0738
| Class C:vacuole | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT3G58730 | Predictedco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationinteraction prediction | FSW = 0.2744
| Class C:vacuole | VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD) |
AT3G01390 | PredictedAffinity Capture-Western | FSW = 0.3529
| Class C:vacuole | VMA10 (VACUOLAR MEMBRANE ATPASE 10) HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM |
AT3G28710 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0712
| Class C:vacuole | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT4G02620 | Predictedco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationinteraction prediction | FSW = 0.4808
| Class C:vacuole | VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN |
AT4G23710 | Predictedinteraction prediction | FSW = 0.1735
| Class C:vacuole | VAG2 HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G64200 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.4201
| Class C:vacuole | VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT2G45130 | PredictedAffinity Capture-Western | FSW = 0.0920
| Class C:plastid | SPX3 (SPX DOMAIN GENE 3) |
AT5G42740 | PredictedAffinity Capture-MS | FSW = 0.0329
| Unknown | GLUCOSE-6-PHOSPHATE ISOMERASE CYTOSOLIC (PGIC) |
AT5G52640 | PredictedSynthetic Lethalitytwo hybrid | FSW = 0.0085
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G26660 | PredictedAffinity Capture-Western | FSW = 0.0756
| Unknown | SPX2 (SPX DOMAIN GENE 2) |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT2G28520 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1607
| Unknown | VHA-A1 (VACUOLAR PROTON ATPASE A 1) ATPASE |
AT4G33150 | PredictedAffinity Capture-MS | FSW = 0.0726
| Unknown | LYSINE-KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE BIFUNCTIONAL ENZYME |
AT2G40730 | PredictedAffinity Capture-MS | FSW = 0.0368
| Unknown | HEAT REPEAT-CONTAINING PROTEIN |
AT3G08560 | PredictedAffinity Capture-Westernco-fractionationCo-fractionationinteraction prediction | FSW = 0.3841
| Unknown | VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0112
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT4G32840 | Predictedin vitroin vivo | FSW = 0.0329
| Unknown | PFK6 (PHOSPHOFRUCTOKINASE 6) 6-PHOSPHOFRUCTOKINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454