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AT2G21410 - ( VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPase )

24 Proteins interacs with AT2G21410

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G39080	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.1471	Class C: vacuole plastid	VHA-A3 (VACUOLAR PROTON ATPASE A3) ATPASE
AT1G76030	Predicted Affinity Capture-Western Affinity Capture-Western co-fractionation Co-fractionation Affinity Capture-MS interaction prediction	FSW = 0.2689	Class C: vacuole plastid	VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT
AT1G78900	Predicted two hybrid co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS two hybrid two hybrid Affinity Capture-Western co-fractionation Co-fractionation Affinity Capture-MS interaction prediction	FSW = 0.2885	Class C: vacuole plastid	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G42050	Predicted Reconstituted Complex co-fractionation Co-fractionation Affinity Capture-Western Reconstituted Complex Affinity Capture-Western co-fractionation Co-fractionation interaction prediction	FSW = 0.4481	Class C: vacuole plastid	VACUOLAR ATP SYNTHASE SUBUNIT H FAMILY PROTEIN
AT1G20260	Predicted Affinity Capture-MS Affinity Capture-Western co-fractionation Co-fractionation	FSW = 0.1111	Class C: vacuole plastid	HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT1G12840	Predicted co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-Western co-fractionation Co-fractionation interaction prediction	FSW = 0.2873	Class C: vacuole	DET3 (DE-ETIOLATED 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G28715	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western co-fractionation Co-fractionation interaction prediction	FSW = 0.0738	Class C: vacuole	H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT3G58730	Predicted co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-Western co-fractionation Co-fractionation interaction prediction	FSW = 0.2744	Class C: vacuole	VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD)
AT3G01390	Predicted Affinity Capture-Western	FSW = 0.3529	Class C: vacuole	VMA10 (VACUOLAR MEMBRANE ATPASE 10) HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM
AT3G28710	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western co-fractionation Co-fractionation	FSW = 0.0712	Class C: vacuole	H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT4G02620	Predicted co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western co-fractionation Co-fractionation interaction prediction	FSW = 0.4808	Class C: vacuole	VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN
AT4G23710	Predicted interaction prediction	FSW = 0.1735	Class C: vacuole	VAG2 HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G64200	Predicted Affinity Capture-Western co-fractionation Co-fractionation	FSW = 0.4201	Class C: vacuole	VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT2G45130	Predicted Affinity Capture-Western	FSW = 0.0920	Class C: plastid	SPX3 (SPX DOMAIN GENE 3)
AT5G42740	Predicted Affinity Capture-MS	FSW = 0.0329	Unknown	GLUCOSE-6-PHOSPHATE ISOMERASE CYTOSOLIC (PGIC)
AT5G52640	Predicted Synthetic Lethality two hybrid	FSW = 0.0085	Unknown	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT2G26660	Predicted Affinity Capture-Western	FSW = 0.0756	Unknown	SPX2 (SPX DOMAIN GENE 2)
AT5G37720	Predicted Affinity Capture-MS	FSW = 0.0092	Unknown	RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT2G28520	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.1607	Unknown	VHA-A1 (VACUOLAR PROTON ATPASE A 1) ATPASE
AT4G33150	Predicted Affinity Capture-MS	FSW = 0.0726	Unknown	LYSINE-KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE BIFUNCTIONAL ENZYME
AT2G40730	Predicted Affinity Capture-MS	FSW = 0.0368	Unknown	HEAT REPEAT-CONTAINING PROTEIN
AT3G08560	Predicted Affinity Capture-Western co-fractionation Co-fractionation interaction prediction	FSW = 0.3841	Unknown	VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT5G02530	Predicted Affinity Capture-MS	FSW = 0.0112	Unknown	RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT4G32840	Predicted in vitro in vivo	FSW = 0.0329	Unknown	PFK6 (PHOSPHOFRUCTOKINASE 6) 6-PHOSPHOFRUCTOKINASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT2G21410 - ( VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPase )

Class C:

Class C:

Class C:

Class C:

Class C:

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Class C:

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Class C:

Unknown

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Downloads

Fasta sequences:

Quick help

FSW

C3

PEP

How to cite