Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G22840 - ( CYTC-1 (CYTOCHROME C-1) electron carrier/ heme binding / iron ion binding )

23 Proteins interacs with AT1G22840
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G15220

Experimental

two hybrid

FSW = 0.1667

Class A:

mitochondrion

Class B:

vacuole

Class D:

mitochondrion (p = 0.82)

CCMH OXIDOREDUCTASE
ATMG00960Experimental

FSW = 0.1481

Unknown

ENCODES A PROTEIN OF THE MITOCHONDRIAL MEMBRANE WHICH HAS BEEN SHOWN TO BE PRESENT IN A NUMBER OF UNIDENTIFIED COMPLEXES INCLUDING A 500-KDA COMPLEX POSTULATED TO HAVE HEME LYASE ACTIVITY IN WHICH ANOTHER PROTEIN (ATCCMH AT1G15220) IS ALSO INVOLVED CYTOCHROME C BIOGENESIS ORF203
AT3G26590

Predicted

biochemical

FSW = 0.0294

Class C:

vacuole

MATE EFFLUX FAMILY PROTEIN
AT4G10040

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.0802

Class C:

mitochondrion

CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING
AT3G07100

Predicted

two hybrid

two hybrid

FSW = 0.0163

Unknown

PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE
AT5G06290

Predicted

biochemical

FSW = 0.0140

Unknown

2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN
AT1G22450

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0395

Unknown

COX6B (CYTOCHROME C OXIDASE 6B) CYTOCHROME-C OXIDASE
AT3G48930

Predicted

biochemical

FSW = 0.0440

Unknown

EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G27500

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0580

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT1G04290

Predicted

two hybrid

two hybrid

FSW = 0.1026

Unknown

THIOESTERASE FAMILY PROTEIN
AT2G41620

Predicted

two hybrid

FSW = 0.0362

Unknown

NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN
AT4G13980

Predicted

biochemical

FSW = 0.0114

Unknown

AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT2G36170Predicted

Synthetic Lethality

FSW = 0.0136

Unknown

UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT2G38960

Predicted

biochemical

FSW = 0.0155

Unknown

AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING
AT5G37340

Predicted

two hybrid

FSW = 0.0667

Unknown

ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN
AT1G20920

Predicted

Affinity Capture-MS

FSW = 0.0153

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT3G06470

Predicted

biochemical

FSW = 0.0224

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT4G00980

Predicted

Affinity Capture-MS

FSW = 0.0884

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT4G14240

Predicted

biochemical

FSW = 0.0161

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK)
AT5G49510

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0045

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G66640

Predicted

biochemical

FSW = 0.0140

Unknown

DAR3 (DA1-RELATED PROTEIN 3)
AT3G57350

Predicted

two hybrid

FSW = 0.0741

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT LOCATED IN NUCLEAR PORE CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN INTERACTING COMPONENT NUP93/NIC96 (INTERPROIPR007231) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN (TAIRAT2G416201) HAS 234 BLAST HITS TO 230 PROTEINS IN 99 SPECIES ARCHAE - 0 BACTERIA - 3 METAZOA - 124 FUNGI - 76 PLANTS - 29 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK)
AT5G22480

Predicted

two hybrid

FSW = 0.0508

Unknown

ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454