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AT1G01620 - ( PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) water channel )

36 Proteins interacs with AT1G01620

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G26520	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.7133	Class C: plastid plasma membrane	TIP2 (TONOPLAST INTRINSIC PROTEIN 2) WATER CHANNEL
AT3G16240	Predicted Phylogenetic profile method Co-expression	FSW = 0.4507	Class C: plastid plasma membrane	DELTA-TIP AMMONIA TRANSPORTER/ METHYLAMMONIUM TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT2G37170	Predicted Shared biological function Phylogenetic profile method	FSW = 0.6786	Class C: plastid plasma membrane	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) WATER CHANNEL
AT3G53420	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.6102	Class C: plastid plasma membrane	PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) WATER CHANNEL
AT2G45960	Predicted Shared biological function Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.4375	Class C: plastid plasma membrane	PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL
AT1G16030	Predicted Phenotypic Enhancement	FSW = 0.0296	Class C: plastid plasma membrane	HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT3G47520	Predicted Phenotypic Enhancement	FSW = 0.0335	Class C: plastid	MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT5G09590	Predicted Synthetic Lethality	FSW = 0.0191	Class C: plastid	MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT1G07420	Predicted two hybrid	FSW = 0.0148	Class C: plastid	SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT4G35100	Predicted Phylogenetic profile method	FSW = 0.7241	Class C: plasma membrane	PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3) WATER CHANNEL
AT2G39010	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.6786	Class C: plasma membrane	PIP2E (PLASMA MEMBRANE INTRINSIC PROTEIN 2E) WATER CHANNEL
AT3G61430	Predicted Shared biological function Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.3465	Class C: plasma membrane	PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT1G55690	Predicted two hybrid	FSW = 0.0418	Class C: plasma membrane	SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT3G19930	Predicted Phenotypic Enhancement	FSW = 0.0825	Class C: plasma membrane	STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT5G26340	Predicted Phenotypic Enhancement	FSW = 0.0187	Class C: plasma membrane	MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT1G69850	Predicted Phenotypic Enhancement	FSW = 0.0281	Class C: plasma membrane	ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER
AT4G00430	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.7667	Class C: plasma membrane	PIP14 (PLASMA MEMBRANE INTRINSIC PROTEIN 14) WATER CHANNEL
AT5G60660	Predicted Phylogenetic profile method Co-expression	FSW = 0.6446	Class C: plasma membrane	PIP24 (PLASMA MEMBRANE INTRINSIC PROTEIN 24) WATER CHANNEL
AT4G23400	Predicted Phylogenetic profile method Co-expression	FSW = 0.7018	Class C: plasma membrane	PIP15 (PLASMA MEMBRANE INTRINSIC PROTEIN 15) WATER CHANNEL
AT2G37180	Predicted Shared biological function Phylogenetic profile method	FSW = 0.6296	Class C: plasma membrane	RD28 (RESPONSIVE TO DESICCATION 28) WATER CHANNEL
AT2G16850	Predicted Phylogenetic profile method	FSW = 0.6697	Class C: plasma membrane	PIP28 (PLASMA MEMBRANE INTRINSIC PROTEIN 28) WATER CHANNEL
AT4G18910	Predicted Phylogenetic profile method Co-expression	FSW = 0.4521	Class C: plasma membrane	NIP12 (NOD26-LIKE INTRINSIC PROTEIN 12) ARSENITE TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT2G25810	Predicted Phylogenetic profile method Co-expression	FSW = 0.6683	Unknown	TIP41 (TONOPLAST INTRINSIC PROTEIN 41) WATER CHANNEL
AT2G36830	Predicted Phylogenetic profile method Co-expression	FSW = 0.7073	Unknown	GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT3G62870	Predicted Affinity Capture-MS synthetic growth defect	FSW = 0.0157	Unknown	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G07260	Predicted Affinity Capture-Western two hybrid	FSW = 0.0595	Unknown	FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN
AT1G17810	Predicted Phylogenetic profile method Co-expression	FSW = 0.3536	Unknown	BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT5G37820	Predicted Phylogenetic profile method	FSW = 0.4702	Unknown	NIP42 (NOD26-LIKE INTRINSIC PROTEIN 42) WATER CHANNEL
AT3G54820	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.4456	Unknown	PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL
AT4G19030	Predicted Phylogenetic profile method Co-expression	FSW = 0.4702	Unknown	NLM1 ARSENITE TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT1G31885	Predicted Phylogenetic profile method	FSW = 0.4702	Unknown	TRANSPORTER
AT3G47440	Predicted Phylogenetic profile method	FSW = 0.7133	Unknown	TIP51 (TONOPLAST INTRINSIC PROTEIN 51) UREA TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT1G08750	Predicted two hybrid	FSW = 0.0148	Unknown	GPI-ANCHOR TRANSAMIDASE PUTATIVE
AT3G06460	Predicted two hybrid Phenotypic Enhancement	FSW = 0.0661	Unknown	GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT1G08910	Predicted Phenotypic Enhancement	FSW = 0.0538	Unknown	EMB3001 (EMBRYO DEFECTIVE 3001) ZINC ION BINDING
AT2G23070	Predicted Phenotypic Enhancement	FSW = 0.0139	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT1G01620 - ( PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) water channel )

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Fasta sequences:

Quick help

FSW

C3

PEP

How to cite