Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT1G01620 - ( PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) water channel )

36 Proteins interacs with AT1G01620
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G26520

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.7133

Class C:

plastid

plasma membrane

TIP2 (TONOPLAST INTRINSIC PROTEIN 2) WATER CHANNEL
AT3G16240

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4507

Class C:

plastid

plasma membrane

DELTA-TIP AMMONIA TRANSPORTER/ METHYLAMMONIUM TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT2G37170

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.6786

Class C:

plastid

plasma membrane

PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) WATER CHANNEL
AT3G53420

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.6102

Class C:

plastid

plasma membrane

PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) WATER CHANNEL
AT2G45960

Predicted

Shared biological function

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.4375

Class C:

plastid

plasma membrane

PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL
AT1G16030

Predicted

Phenotypic Enhancement

FSW = 0.0296

Class C:

plastid

plasma membrane

HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT3G47520

Predicted

Phenotypic Enhancement

FSW = 0.0335

Class C:

plastid

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT5G09590

Predicted

Synthetic Lethality

FSW = 0.0191

Class C:

plastid

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT1G07420

Predicted

two hybrid

FSW = 0.0148

Class C:

plastid

SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT4G35100

Predicted

Phylogenetic profile method

FSW = 0.7241

Class C:

plasma membrane

PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3) WATER CHANNEL
AT2G39010

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.6786

Class C:

plasma membrane

PIP2E (PLASMA MEMBRANE INTRINSIC PROTEIN 2E) WATER CHANNEL
AT3G61430

Predicted

Shared biological function

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.3465

Class C:

plasma membrane

PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT1G55690

Predicted

two hybrid

FSW = 0.0418

Class C:

plasma membrane

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT3G19930

Predicted

Phenotypic Enhancement

FSW = 0.0825

Class C:

plasma membrane

STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT5G26340

Predicted

Phenotypic Enhancement

FSW = 0.0187

Class C:

plasma membrane

MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT1G69850

Predicted

Phenotypic Enhancement

FSW = 0.0281

Class C:

plasma membrane

ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER
AT4G00430

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.7667

Class C:

plasma membrane

PIP14 (PLASMA MEMBRANE INTRINSIC PROTEIN 14) WATER CHANNEL
AT5G60660

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6446

Class C:

plasma membrane

PIP24 (PLASMA MEMBRANE INTRINSIC PROTEIN 24) WATER CHANNEL
AT4G23400

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7018

Class C:

plasma membrane

PIP15 (PLASMA MEMBRANE INTRINSIC PROTEIN 15) WATER CHANNEL
AT2G37180

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.6296

Class C:

plasma membrane

RD28 (RESPONSIVE TO DESICCATION 28) WATER CHANNEL
AT2G16850

Predicted

Phylogenetic profile method

FSW = 0.6697

Class C:

plasma membrane

PIP28 (PLASMA MEMBRANE INTRINSIC PROTEIN 28) WATER CHANNEL
AT4G18910

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4521

Class C:

plasma membrane

NIP12 (NOD26-LIKE INTRINSIC PROTEIN 12) ARSENITE TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT2G25810

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6683

Unknown

TIP41 (TONOPLAST INTRINSIC PROTEIN 41) WATER CHANNEL
AT2G36830

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7073

Unknown

GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT3G62870

Predicted

Affinity Capture-MS

synthetic growth defect

FSW = 0.0157

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G07260

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.0595

Unknown

FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN
AT1G17810

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3536

Unknown

BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT5G37820

Predicted

Phylogenetic profile method

FSW = 0.4702

Unknown

NIP42 (NOD26-LIKE INTRINSIC PROTEIN 42) WATER CHANNEL
AT3G54820

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.4456

Unknown

PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL
AT4G19030

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4702

Unknown

NLM1 ARSENITE TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT1G31885

Predicted

Phylogenetic profile method

FSW = 0.4702

Unknown

TRANSPORTER
AT3G47440

Predicted

Phylogenetic profile method

FSW = 0.7133

Unknown

TIP51 (TONOPLAST INTRINSIC PROTEIN 51) UREA TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT1G08750

Predicted

two hybrid

FSW = 0.0148

Unknown

GPI-ANCHOR TRANSAMIDASE PUTATIVE
AT3G06460

Predicted

two hybrid

Phenotypic Enhancement

FSW = 0.0661

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT1G08910Predicted

Phenotypic Enhancement

FSW = 0.0538

Unknown

EMB3001 (EMBRYO DEFECTIVE 3001) ZINC ION BINDING
AT2G23070

Predicted

Phenotypic Enhancement

FSW = 0.0139

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454