Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G08820 - ( VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2) structural molecule )
30 Proteins interacs with AT1G08820Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G44610 | Predictedinteraction prediction | FSW = 0.0367
| Class C:plasma membrane | RAB6A GTP BINDING / PROTEIN BINDING |
AT3G48750 | Predictedinteraction prediction | FSW = 0.0047
| Class C:plasma membrane | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G49340 | PredictedAffinity Capture-MSSynthetic Lethalityinteraction prediction | FSW = 0.1111
| Class C:plasma membrane | ATPI4K ALPHA 1-PHOSPHATIDYLINOSITOL 4-KINASE/ INOSITOL OR PHOSPHATIDYLINOSITOL KINASE |
AT1G59820 | PredictedPhenotypic Enhancement | FSW = 0.0794
| Class C:plasma membrane | ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER |
AT3G51460 | Predictedinterologs mapping | FSW = 0.0352
| Class C:plasma membrane | RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE |
AT1G07670 | PredictedPhenotypic Enhancement | FSW = 0.0382
| Class C:plasma membrane | CALCIUM-TRANSPORTING ATPASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0185
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G05570 | Predictedinteraction prediction | FSW = 0.0303
| Class C:plasma membrane | CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G13210 | Predictedinterologs mapping | FSW = 0.0534
| Class C:plasma membrane | ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING |
AT2G45200 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0763
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT2G40360 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0055
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.0416
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT1G10130 | Predictedinterologs mapping | FSW = 0.0292
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT5G66020 | Predictedtwo hybridPhenotypic Enhancement | FSW = 0.0645
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT2G46520 | Predictedinterologs mapping | FSW = 0.0220
| Unknown | CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN PUTATIVE / IMPORTIN-ALPHA RE-EXPORTER PUTATIVE |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0042
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT5G40820 | Predictedinterologs mapping | FSW = 0.0041
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT4G39800 | Predictedinterologs mapping | FSW = 0.0945
| Unknown | MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) INOSITOL-3-PHOSPHATE SYNTHASE |
AT2G22240 | Predictedinterologs mapping | FSW = 0.0945
| Unknown | MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) BINDING / CATALYTIC/ INOSITOL-3-PHOSPHATE SYNTHASE |
AT1G01910 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.1574
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
AT3G55380 | PredictedPhenotypic Enhancement | FSW = 0.0487
| Unknown | UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE |
AT5G04540 | Predictedinterologs mapping | FSW = 0.0282
| Unknown | PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT5G05010 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0194
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT-RELATED |
AT5G10260 | PredictedSynthetic Lethality | FSW = 0.0377
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT2G13680 | PredictedAffinity Capture-MS | FSW = 0.0505
| Unknown | CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE |
AT4G12460 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1612
| Unknown | ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B) OXYSTEROL BINDING |
AT4G22540 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0962
| Unknown | ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A) OXYSTEROL BINDING / PHOSPHOINOSITIDE BINDING |
AT4G38630 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0134
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT1G13170 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0627
| Unknown | ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D) OXYSTEROL BINDING |
AT3G46460 | Predictedinterologs mapping | FSW = 0.0279
| Unknown | UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454