Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G36730 - ( eukaryotic translation initiation factor 5 putative / eIF-5 putative )

32 Proteins interacs with AT1G36730
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G31610

Predicted

Affinity Capture-MS

FSW = 0.0444

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3A)
AT2G01250

Predicted

Affinity Capture-MS

FSW = 0.0366

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT5G15200

Predicted

Affinity Capture-MS

FSW = 0.0258

Unknown

40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT2G37270

Predicted

Affinity Capture-MS

FSW = 0.0428

Unknown

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G25780

Predicted

co-fractionation

Co-fractionation

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-purification

Reconstituted Complex

FSW = 0.2500

Unknown

EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT3G07110

Predicted

Affinity Capture-MS

FSW = 0.0940

Unknown

60S RIBOSOMAL PROTEIN L13A (RPL13AA)
AT1G48830

Predicted

Affinity Capture-MS

FSW = 0.0586

Unknown

40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT5G08740

Predicted

two hybrid

FSW = 0.0306

Unknown

NDC1 (NAD(P)H DEHYDROGENASE C1) NADH DEHYDROGENASE
AT3G11400

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3208

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G
AT5G20920

Predicted

Reconstituted Complex

in vivo

in vivo

in vivo

in vitro

in vitro

in vitro

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

interologs mapping

far western blotting

Reconstituted Complex

FSW = 0.2030

Unknown

EIF2 BETA TRANSLATION INITIATION FACTOR
AT4G11420

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

FSW = 0.1749

Unknown

EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT2G42520

Predicted

Affinity Capture-MS

FSW = 0.0803

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT1G10300Predicted

Affinity Capture-MS

FSW = 0.0684

Unknown

GTP-BINDING PROTEIN-RELATED
AT2G40290

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0547

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT2G41630

Predicted

Affinity Capture-MS

FSW = 0.0941

Unknown

TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT2G34210

Predicted

Affinity Capture-MS

FSW = 0.0369

Unknown

STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT5G18420

Predicted

two hybrid

two hybrid

FSW = 0.0250

Unknown

UNKNOWN PROTEIN
AT5G06000

Predicted

in vivo

Affinity Capture-MS

FSW = 0.1385

Unknown

EIF3G2 RNA BINDING / TRANSLATION INITIATION FACTOR
AT5G35680

Predicted

Affinity Capture-MS

FSW = 0.0262

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 1A PUTATIVE / EIF-1A PUTATIVE / EIF-4C PUTATIVE
AT3G22860

Predicted

Reconstituted Complex

Reconstituted Complex

Reconstituted Complex

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

Reconstituted Complex

two hybrid

FSW = 0.2876

Unknown

TIF3C2 TRANSLATION INITIATION FACTOR
AT2G46280

Predicted

co-fractionation

Co-fractionation

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-fractionation

Reconstituted Complex

FSW = 0.1410

Unknown

TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G04170

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

FSW = 0.1939

Unknown

EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT1G54290

Predicted

Reconstituted Complex

Reconstituted Complex

Reconstituted Complex

Phenotypic Suppression

co-fractionation

Co-fractionation

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-fractionation

interologs mapping

Phenotypic Suppression

Reconstituted Complex

Synthetic Lethality

FSW = 0.0979

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT2G31260

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0051

Unknown

APG9 (AUTOPHAGY 9)
AT1G21160

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2215

Unknown

GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT3G13640

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2204

Unknown

ATRLI1 TRANSPORTER
AT3G48960

Predicted

Affinity Capture-MS

FSW = 0.0693

Unknown

60S RIBOSOMAL PROTEIN L13 (RPL13C)
AT1G08410

Predicted

Affinity Capture-MS

FSW = 0.0797

Unknown

GTP-BINDING FAMILY PROTEIN
AT4G28200

Predicted

Affinity Capture-MS

FSW = 0.0189

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK)
AT5G14520

Predicted

Affinity Capture-MS

FSW = 0.0248

Unknown

PESCADILLO-RELATED
AT3G60240

Predicted

Reconstituted Complex

FSW = 0.0333

Unknown

EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT3G07300

Predicted

Reconstituted Complex

FSW = 0.0769

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454