Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G40400 - ( unknown protein )
34 Proteins interacs with AT2G40400Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1212
| Class C:plastid | HISTONE H4 |
AT5G65430 | PredictedPhenotypic Enhancement | FSW = 0.0348
| Class C:plastid | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G56140 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1081
| Class C:plastid | UNKNOWN PROTEIN |
AT2G43030 | PredictedPhenotypic Enhancement | FSW = 0.0260
| Class C:plastid | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
AT1G12900 | PredictedAffinity Capture-MS | FSW = 0.2515
| Class C:plastid | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT3G54670 | PredictedPhenotypic Enhancement | FSW = 0.0243
| Class C:plastid | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT4G01100 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3200
| Unknown | ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) ADP TRANSMEMBRANE TRANSPORTER/ AMP TRANSMEMBRANE TRANSPORTER/ ATP TRANSMEMBRANE TRANSPORTER/ BINDING |
AT4G19640 | Predictedtwo hybrid | FSW = 0.0110
| Unknown | ARA7 GTP BINDING |
AT1G16240 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2687
| Unknown | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT3G22110 | PredictedPhenotypic Enhancement | FSW = 0.0243
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G36640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2711
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G33090 | PredictedPhenotypic Enhancement | FSW = 0.0386
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT4G09800 | PredictedPhenotypic Enhancement | FSW = 0.0431
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G28740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3064
| Unknown | HIS4 DNA BINDING |
AT1G13580 | PredictedPhenotypic Enhancement | FSW = 0.0295
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G72680 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3403
| Unknown | CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE |
AT1G78960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3600
| Unknown | ATLUP2 BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT2G23820 | PredictedAffinity Capture-MS | FSW = 0.0237
| Unknown | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
AT2G31260 | PredictedPhenotypic Enhancement | FSW = 0.0378
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G34890 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3529
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT1G64170 | Predictedtwo hybrid | FSW = 0.0632
| Unknown | ATCHX16 (CATION/H+ EXCHANGER 16) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT2G24960 | PredictedPhenotypic Enhancement | FSW = 0.0783
| Unknown | UNKNOWN PROTEIN |
AT3G11290 | PredictedPhenotypic Enhancement | FSW = 0.0432
| Unknown | UNKNOWN PROTEIN |
AT3G22320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2078
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G28610 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridinterologs mapping | FSW = 0.4848
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G46320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1837
| Unknown | HISTONE H4 |
AT3G50860 | PredictedSynthetic Rescue | FSW = 0.1567
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT5G20340 | PredictedPhenotypic Enhancement | FSW = 0.0186
| Unknown | BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G38890 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2106
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G59490 | PredictedPhenotypic Enhancement | FSW = 0.0287
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT2G47570 | PredictedPhenotypic Enhancement | FSW = 0.0132
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G18660 | PredictedPhenotypic Enhancement | FSW = 0.0202
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G18850 | PredictedPhenotypic Enhancement | FSW = 0.0566
| Unknown | LPAT5 ACYLTRANSFERASE |
AT5G64760 | PredictedPhenotypic Enhancement | FSW = 0.0344
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454