Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G77140 - ( VPS45 (VACUOLAR PROTEIN SORTING 45) protein transporter )
38 Proteins interacs with AT1G77140Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G52850 | Experimentalelectron microscopycoimmunoprecipitation | FSW = 0.1071
| Unknown | VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1) AMINO-TERMINAL VACUOLAR SORTING PROPEPTIDE BINDING |
AT5G39510 | Experimentalinteraction detection method | FSW = 0.3698
| Class D:mitochondrion (p = 0.82) | SGR4 (SHOOT GRAVITROPSIM 4) RECEPTOR |
AT2G26300 | Experimental | FSW = 0.0156
| Class D:cytosol (p = 0.67) | GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER |
AT1G26670 | Experimentalcoimmunoprecipitation | FSW = 0.3123
| Unknown | VTI1B SNARE BINDING / RECEPTOR/ SOLUBLE NSF ATTACHMENT PROTEIN |
AT5G26980 | Experimentalinteraction detection methodinteraction detection methodelectron microscopypull downcoimmunoprecipitation | FSW = 0.2045
| Class D:mitochondrion (p = 0.82) | SYP41 (SYNTAXIN OF PLANTS 41) SNAP RECEPTOR |
AT4G02195 | Experimentalelectron microscopypull downcoimmunoprecipitation | FSW = 0.2286
| Class D:mitochondrion (p = 0.82) | SYP42 (SYNTAXIN OF PLANTS 42) SNAP RECEPTOR |
AT4G19640 | PredictedPhenotypic Enhancement | FSW = 0.0360
| Unknown | ARA7 GTP BINDING |
AT3G56190 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0800
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT5G46860 | PredictedAffinity Capture-WesternAffinity Capture-WesternPhenotypic Enhancementinteraction predictionShared biological functionEnriched domain pairCo-expression | FSW = 0.1633
| Unknown | VAM3 SNAP RECEPTOR |
AT5G45130 | PredictedPhenotypic Enhancement | FSW = 0.0567
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT2G38020 | PredictedPhenotypic Enhancement | FSW = 0.2633
| Unknown | VCL1 (VACUOLELESS 1) |
AT3G29100 | Predictedinteraction prediction | FSW = 0.2594
| Unknown | VTI13 SNARE BINDING / RECEPTOR |
AT5G58060 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1898
| Unknown | YKT61 |
AT2G36620 | Predictedtwo hybridtwo hybrid | FSW = 0.0177
| Unknown | RPL24A (RIBOSOMAL PROTEIN L24) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G75990 | PredictedAffinity Capture-MS | FSW = 0.0893
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT1G20200 | PredictedAffinity Capture-MS | FSW = 0.0990
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
AT2G44950 | Predictedsynthetic growth defect | FSW = 0.0614
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT1G28490 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.2215
| Unknown | SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR |
AT3G05710 | Predictedinteraction predictiontwo hybridPhenotypic EnhancementAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSReconstituted Complexinterologs mappingEnriched domain pairCo-expression | FSW = 0.1088
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT5G17790 | Predictedtwo hybrid | FSW = 0.0234
| Unknown | VAR3 (VARIEGATED 3) BINDING / ZINC ION BINDING |
AT2G05170 | PredictedPhenotypic Enhancement | FSW = 0.1662
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT5G01670 | Predictedtwo hybrid | FSW = 0.0078
| Unknown | ALDOSE REDUCTASE PUTATIVE |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.0925
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G12470 | PredictedPhenotypic Enhancement | FSW = 0.3385
| Unknown | PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN |
AT1G29150 | PredictedAffinity Capture-MS | FSW = 0.0649
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G64520 | PredictedAffinity Capture-MS | FSW = 0.0471
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.1052
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.0856
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G58560 | Predictedsynthetic growth defect | FSW = 0.0654
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G38630 | Predictedsynthetic growth defect | FSW = 0.0602
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G10960 | Predictedsynthetic growth defect | FSW = 0.0619
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0688
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G53770 | Predictedsynthetic growth defect | FSW = 0.0242
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT1G32270 | PredictedAffinity Capture-WesternAffinity Capture-WesternPhenotypic EnhancementEnriched domain pairCo-expression | FSW = 0.1067
| Unknown | ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING |
AT3G07120 | Predictedsynthetic growth defect | FSW = 0.1184
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G55255 | Predictedsynthetic growth defect | FSW = 0.0742
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G15920 | Predictedsynthetic growth defect | FSW = 0.0816
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT3G61150 | Predictedtwo hybrid | FSW = 0.0330
| Unknown | HDG1 (HOMEODOMAIN GLABROUS 1) DNA BINDING / TRANSCRIPTION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454