Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G28490 - ( SYP61 (SYNTAXIN OF PLANTS 61) SNAP receptor )
38 Proteins interacs with AT1G28490Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G26980 | ExperimentalAffinity Capture-WesternReconstituted Complexcoimmunoprecipitation | FSW = 0.1702
| Class A:golgiendoplasmic reticulum | SYP41 (SYNTAXIN OF PLANTS 41) SNAP RECEPTOR |
AT5G16830 | Experimentalsplit-reporter assay | FSW = 0.2179
| Class A:endoplasmic reticulumClass B:vacuolegolgiClass D:golgi (p = 0.04) | SYP21 (SYNTAXIN OF PLANTS 21) SNAP RECEPTOR |
AT1G16240 | Experimentalsplit-reporter assayAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.0552
| Class B:vacuolenucleusgolgiendoplasmic reticulumClass D:golgi (p = 0.04) | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT1G79590 | ExperimentalAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.1512
| Class B:vacuolegolgiendoplasmic reticulumClass D:golgi (p = 0.04) | SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR |
AT1G26670 | ExperimentalAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.3529
| Class B:plasma membranegolgiendoplasmic reticulumClass D:golgi (p = 0.04) | VTI1B SNARE BINDING / RECEPTOR/ SOLUBLE NSF ATTACHMENT PROTEIN |
AT4G02195 | ExperimentalAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.2286
| Unknown | SYP42 (SYNTAXIN OF PLANTS 42) SNAP RECEPTOR |
AT5G39510 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexReconstituted ComplexAffinity Capture-WesternCo-purification | FSW = 0.3698
| Class C:golgiendoplasmic reticulum | SGR4 (SHOOT GRAVITROPSIM 4) RECEPTOR |
AT1G04260 | Predictedtwo hybridtwo hybrid | FSW = 0.0842
| Class C:golgi | MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) PROTEIN BINDING |
AT3G24350 | PredictedReconstituted Complexinterologs mappingEnriched domain pairCo-expression | FSW = 0.1613
| Class C:golgi | SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR |
AT1G71270 | PredictedAffinity Capture-Western | FSW = 0.0485
| Class C:golgi | POK (POKY POLLEN TUBE) |
AT5G46860 | PredictedReconstituted ComplexAffinity Capture-WesternCo-purificationSynthetic Lethalityinteraction predictionEnriched domain pairCo-expression | FSW = 0.2739
| Class C:endoplasmic reticulum | VAM3 SNAP RECEPTOR |
AT3G05710 | Predictedtwo hybridPhenotypic EnhancementCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mappinginteraction predictionEnriched domain pairCo-expression | FSW = 0.2567
| Class C:endoplasmic reticulum | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT1G67730 | Predictedtwo hybrid | FSW = 0.0261
| Class C:endoplasmic reticulum | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT2G33120 | PredictedAffinity Capture-Westernsynthetic growth defectinteraction predictionEnriched domain pair | FSW = 0.0972
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT4G30920 | Predictedin vivo | FSW = 0.0536
| Unknown | CYTOSOL AMINOPEPTIDASE FAMILY PROTEIN |
AT3G56190 | PredictedAffinity Capture-WesternAffinity Capture-Westerninteraction prediction | FSW = 0.1930
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT3G29100 | Predictedinteraction predictionEnriched domain pairCo-expression | FSW = 0.3068
| Unknown | VTI13 SNARE BINDING / RECEPTOR |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0057
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G55190 | Predictedinteraction predictioninterologs mapping | FSW = 0.0970
| Unknown | PRA7 |
AT5G58060 | Predictedinteraction prediction | FSW = 0.3030
| Unknown | YKT61 |
AT3G19980 | Predictedbiochemical | FSW = 0.0200
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G61210 | Predictedin vivoin vitroAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.0842
| Unknown | SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) SNAP RECEPTOR/ PROTEIN BINDING |
AT4G24770 | Predictedtwo hybridtwo hybrid | FSW = 0.0245
| Unknown | RBP31 (31-KDA RNA BINDING PROTEIN) RNA BINDING / POLY(U) BINDING |
AT4G19490 | PredictedAffinity Capture-WesternReconstituted Complexinteraction prediction | FSW = 0.2270
| Unknown | PROTEIN BINDING |
AT2G42590 | Predictedtwo hybrid | FSW = 0.0049
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G04750 | PredictedAffinity Capture-Westernsynthetic growth defectEnriched domain pairCo-expression | FSW = 0.0398
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G15780 | Predictedin vitroin vivoin vivoin vitroAffinity Capture-MS | FSW = 0.1522
| Unknown | ATVAMP724 |
AT1G50500 | PredictedAffinity Capture-Western | FSW = 0.1524
| Unknown | HIT1 (HEAT-INTOLERANT 1) TRANSPORTER |
AT1G10060 | Predictedtwo hybrid | FSW = 0.0057
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.0756
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT1G77140 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.2215
| Unknown | VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER |
AT3G13235 | PredictedAffinity Capture-Western | FSW = 0.1196
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT5G10260 | PredictedSynthetic Lethality | FSW = 0.0378
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT3G45630 | Predictedtwo hybrid | FSW = 0.0126
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G32270 | PredictedAffinity Capture-WesternCo-purificationReconstituted ComplexSynthetic Lethality | FSW = 0.1702
| Unknown | ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING |
AT1G50370 | Predictedbiochemical | FSW = 0.0478
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT1G24470 | Predictedtwo hybrid | FSW = 0.0276
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G36300 | Predictedtwo hybridtwo hybridinteraction prediction | FSW = 0.1144
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454