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AT1G76030 - ( vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit )

38 Proteins interacs with AT1G76030

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G29130	Experimental two hybrid Affinity Capture-MS Affinity Capture-Western coimmunoprecipitation	FSW = 0.0465	Class A: vacuole Class B: unclear plastid plasma membrane mitochondrion Class D: cytosol (p = 0.67)	HXK1 (HEXOKINASE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT1G50420	Experimental two hybrid	FSW = 0.1429	Class B: vacuole plastid plasma membrane nucleus Class D: mitochondrion (p = 0.82) cytosol (p = 0.67)	SCL3 TRANSCRIPTION FACTOR
AT3G11280	Experimental two hybrid	FSW = 0.0454	Class B: vacuole plastid plasma membrane nucleus	MYB FAMILY TRANSCRIPTION FACTOR
AT5G35410	Experimental interaction detection method	FSW = 0.0780	Unknown	SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE
AT4G14880	Predicted Affinity Capture-MS	FSW = 0.0276	Class C: vacuole plastid plasma membrane	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) CYSTEINE SYNTHASE
AT4G38510	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.0532	Class C: vacuole plastid plasma membrane	VACUOLAR ATP SYNTHASE SUBUNIT B PUTATIVE / V-ATPASE B SUBUNIT PUTATIVE / VACUOLAR PROTON PUMP B SUBUNIT PUTATIVE / V-ATPASE 57 KDA SUBUNIT PUTATIVE
AT1G78900	Predicted Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS co-fractionation Co-fractionation Affinity Capture-Western two hybrid co-fractionation Co-fractionation Affinity Capture-MS interaction prediction Enriched domain pair Gene neighbors method	FSW = 0.1711	Class C: vacuole plastid plasma membrane	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G42050	Predicted Phenotypic Suppression Affinity Capture-MS	FSW = 0.2815	Class C: vacuole plastid plasma membrane	VACUOLAR ATP SYNTHASE SUBUNIT H FAMILY PROTEIN
AT2G21410	Predicted Affinity Capture-Western Affinity Capture-Western co-fractionation Co-fractionation Affinity Capture-MS interaction prediction	FSW = 0.2689	Class C: vacuole plastid	VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPASE
AT1G20260	Predicted Enriched domain pair Gene neighbors method Phylogenetic profile method	FSW = 0.2404	Class C: vacuole plastid	HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT1G12840	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3227	Class C: vacuole plasma membrane	DET3 (DE-ETIOLATED 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G28715	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0648	Class C: vacuole plasma membrane	H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT3G58730	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2259	Class C: vacuole plasma membrane	VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD)
AT4G02620	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3137	Class C: vacuole plasma membrane	VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN
AT2G46560	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1684	Class C: vacuole	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G23710	Predicted interaction prediction	FSW = 0.1214	Class C: vacuole	VAG2 HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT2G30710	Predicted Synthetic Lethality Synthetic Lethality interaction prediction	FSW = 0.0311	Class C: vacuole	RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT2G28190	Predicted Synthetic Lethality	FSW = 0.0592	Class C: plastid	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT3G12110	Predicted Affinity Capture-Western	FSW = 0.0111	Class C: plasma membrane	ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G07670	Predicted synthetic growth defect	FSW = 0.0414	Class C: plasma membrane	CALCIUM-TRANSPORTING ATPASE
AT5G60790	Predicted Affinity Capture-MS	FSW = 0.0201	Class C: plasma membrane	ATGCN1 TRANSPORTER
AT3G10920	Predicted Phenotypic Enhancement	FSW = 0.0142	Unknown	MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE
AT3G05710	Predicted Synthetic Lethality interaction prediction	FSW = 0.0274	Unknown	SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT4G36480	Predicted Synthetic Lethality	FSW = 0.0677	Unknown	ATLCB1 (LONG-CHAIN BASE1) PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE
AT5G19130	Predicted Affinity Capture-MS	FSW = 0.0493	Unknown	GPI TRANSAMIDASE COMPONENT FAMILY PROTEIN / GAA1-LIKE FAMILY PROTEIN
AT4G26840	Predicted Affinity Capture-MS	FSW = 0.0125	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT4G15900	Predicted Affinity Capture-MS Gene fusion method	FSW = 0.0035	Unknown	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G30825	Predicted Synthetic Lethality	FSW = 0.0276	Unknown	DIS2 (DISTORTED TRICHOMES 2) STRUCTURAL MOLECULE
AT1G60490	Predicted Synthetic Lethality	FSW = 0.0296	Unknown	ATVPS34 1-PHOSPHATIDYLINOSITOL-3-KINASE/ BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT2G02760	Predicted synthetic growth defect	FSW = 0.0270	Unknown	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT3G08560	Predicted Co-purification Affinity Capture-MS	FSW = 0.3137	Unknown	VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G18430	Predicted Synthetic Lethality interaction prediction	FSW = 0.0990	Unknown	CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT4G13720	Predicted Affinity Capture-MS	FSW = 0.0463	Unknown	INOSINE TRIPHOSPHATE PYROPHOSPHATASE PUTATIVE / HAM1 FAMILY PROTEIN
AT4G24040	Predicted Affinity Capture-MS	FSW = 0.0168	Unknown	TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE
AT5G12030	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0250	Unknown	AT-HSP176A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 176A) UNFOLDED PROTEIN BINDING
AT5G42190	Predicted Affinity Capture-Western Affinity Capture-MS interaction prediction	FSW = 0.0227	Unknown	ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G65180	Predicted Affinity Capture-MS	FSW = 0.0175	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK)
AT2G27600	Predicted Synthetic Lethality	FSW = 0.0186	Unknown	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT1G76030 - ( vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit )

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Class D:

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Unknown

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Unknown

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Unknown

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Fasta sequences:

Quick help

FSW

C3

PEP

How to cite