Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G76030 - ( vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit )
38 Proteins interacs with AT1G76030Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G29130 | Experimentaltwo hybridAffinity Capture-MSAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.0465
| Class A:vacuoleClass B:unclearplastidplasma membranemitochondrionClass D:cytosol (p = 0.67) | HXK1 (HEXOKINASE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT1G50420 | Experimentaltwo hybrid | FSW = 0.1429
| Class B:vacuoleplastidplasma membranenucleusClass D:mitochondrion (p = 0.82)cytosol (p = 0.67) | SCL3 TRANSCRIPTION FACTOR |
AT3G11280 | Experimentaltwo hybrid | FSW = 0.0454
| Class B:vacuoleplastidplasma membranenucleus | MYB FAMILY TRANSCRIPTION FACTOR |
AT5G35410 | Experimentalinteraction detection method | FSW = 0.0780
| Unknown | SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE |
AT4G14880 | PredictedAffinity Capture-MS | FSW = 0.0276
| Class C:vacuoleplastidplasma membrane | OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) CYSTEINE SYNTHASE |
AT4G38510 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0532
| Class C:vacuoleplastidplasma membrane | VACUOLAR ATP SYNTHASE SUBUNIT B PUTATIVE / V-ATPASE B SUBUNIT PUTATIVE / VACUOLAR PROTON PUMP B SUBUNIT PUTATIVE / V-ATPASE 57 KDA SUBUNIT PUTATIVE |
AT1G78900 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationAffinity Capture-Westerntwo hybridco-fractionationCo-fractionationAffinity Capture-MSinteraction predictionEnriched domain pairGene neighbors method | FSW = 0.1711
| Class C:vacuoleplastidplasma membrane | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G42050 | PredictedPhenotypic SuppressionAffinity Capture-MS | FSW = 0.2815
| Class C:vacuoleplastidplasma membrane | VACUOLAR ATP SYNTHASE SUBUNIT H FAMILY PROTEIN |
AT2G21410 | PredictedAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-MSinteraction prediction | FSW = 0.2689
| Class C:vacuoleplastid | VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPASE |
AT1G20260 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.2404
| Class C:vacuoleplastid | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT1G12840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3227
| Class C:vacuoleplasma membrane | DET3 (DE-ETIOLATED 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G28715 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0648
| Class C:vacuoleplasma membrane | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT3G58730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2259
| Class C:vacuoleplasma membrane | VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD) |
AT4G02620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3137
| Class C:vacuoleplasma membrane | VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN |
AT2G46560 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1684
| Class C:vacuole | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G23710 | Predictedinteraction prediction | FSW = 0.1214
| Class C:vacuole | VAG2 HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G30710 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.0311
| Class C:vacuole | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT2G28190 | PredictedSynthetic Lethality | FSW = 0.0592
| Class C:plastid | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT3G12110 | PredictedAffinity Capture-Western | FSW = 0.0111
| Class C:plasma membrane | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G07670 | Predictedsynthetic growth defect | FSW = 0.0414
| Class C:plasma membrane | CALCIUM-TRANSPORTING ATPASE |
AT5G60790 | PredictedAffinity Capture-MS | FSW = 0.0201
| Class C:plasma membrane | ATGCN1 TRANSPORTER |
AT3G10920 | PredictedPhenotypic Enhancement | FSW = 0.0142
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT3G05710 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0274
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT4G36480 | PredictedSynthetic Lethality | FSW = 0.0677
| Unknown | ATLCB1 (LONG-CHAIN BASE1) PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE |
AT5G19130 | PredictedAffinity Capture-MS | FSW = 0.0493
| Unknown | GPI TRANSAMIDASE COMPONENT FAMILY PROTEIN / GAA1-LIKE FAMILY PROTEIN |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT4G15900 | PredictedAffinity Capture-MSGene fusion method | FSW = 0.0035
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G30825 | PredictedSynthetic Lethality | FSW = 0.0276
| Unknown | DIS2 (DISTORTED TRICHOMES 2) STRUCTURAL MOLECULE |
AT1G60490 | PredictedSynthetic Lethality | FSW = 0.0296
| Unknown | ATVPS34 1-PHOSPHATIDYLINOSITOL-3-KINASE/ BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT2G02760 | Predictedsynthetic growth defect | FSW = 0.0270
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT3G08560 | PredictedCo-purificationAffinity Capture-MS | FSW = 0.3137
| Unknown | VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G18430 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0990
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT4G13720 | PredictedAffinity Capture-MS | FSW = 0.0463
| Unknown | INOSINE TRIPHOSPHATE PYROPHOSPHATASE PUTATIVE / HAM1 FAMILY PROTEIN |
AT4G24040 | PredictedAffinity Capture-MS | FSW = 0.0168
| Unknown | TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE |
AT5G12030 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0250
| Unknown | AT-HSP176A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 176A) UNFOLDED PROTEIN BINDING |
AT5G42190 | PredictedAffinity Capture-WesternAffinity Capture-MSinteraction prediction | FSW = 0.0227
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G65180 | PredictedAffinity Capture-MS | FSW = 0.0175
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK) |
AT2G27600 | PredictedSynthetic Lethality | FSW = 0.0186
| Unknown | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454