Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G15790 - ( SQN (SQUINT) peptidyl-prolyl cis-trans isomerase )
48 Proteins interacs with AT2G15790| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G08580
   | Predictedin vitroin vitroin vitro | FSW = 0.0247
| Unknown | AAC1 (ADP/ATP CARRIER 1) ATPADP ANTIPORTER/ BINDING |
| AT3G16480
| PredictedAffinity Capture-MS | FSW = 0.0115
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
| AT5G02500
| Predictedin vitroReconstituted Complex | FSW = 0.0513
| Unknown | HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING |
| AT3G12580
| Predictedin vitro | FSW = 0.0187
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
| AT2G47470
| PredictedGene fusion method | FSW = 0.0108
| Unknown | UNE5 (UNFERTILIZED EMBRYO SAC 5) PROTEIN DISULFIDE ISOMERASE |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0091
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT4G23710
| Predictedinteraction prediction | FSW = 0.0203
| Unknown | VAG2 HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT1G29900
| PredictedAffinity Capture-MS | FSW = 0.0052
| Unknown | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
| AT4G35460
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0421
| Unknown | NTRB (NADPH-DEPENDENT THIOREDOXIN REDUCTASE B) THIOREDOXIN-DISULFIDE REDUCTASE |
| AT5G63110
| Predictedtwo hybridReconstituted Complex | FSW = 0.0109
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
| AT4G35800
| Predictedtwo hybridin vitroin vivo | FSW = 0.0081
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT5G56030
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0144
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
| AT3G47370
| PredictedAffinity Capture-MS | FSW = 0.0083
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
| AT5G52640
| PredictedAffinity Capture-MSReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-Westerntwo hybridAffinity Capture-MSsynthetic growth defectinterologs mappinginteraction predictionEnriched domain pairCo-expression | FSW = 0.0130
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT2G18040
| Predictedinterologs mappingAffinity Capture-MSinteraction prediction | FSW = 0.0429
| Unknown | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| AT1G80050
| PredictedSynthetic Lethality | FSW = 0.0226
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
| AT2G17420
| PredictedAffinity Capture-MS | FSW = 0.0223
| Unknown | NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) THIOREDOXIN-DISULFIDE REDUCTASE |
| AT4G05190
| PredictedSynthetic Lethality | FSW = 0.0138
| Unknown | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
| AT1G79020
| PredictedAffinity Capture-MS | FSW = 0.0261
| Unknown | TRANSCRIPTION FACTOR-RELATED |
| AT4G38130
| Predictedinterologs mappinginteraction prediction | FSW = 0.0128
| Unknown | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
| AT1G67970
| PredictedReconstituted Complex | FSW = 0.0525
| Unknown | AT-HSFA8 DNA BINDING / TRANSCRIPTION FACTOR |
| AT3G15220
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0125
| Unknown | PROTEIN KINASE PUTATIVE |
| AT1G53165
| PredictedAffinity Capture-MS | FSW = 0.0198
| Unknown | ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT4G16420
| PredictedSynthetic Lethality | FSW = 0.0123
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
| AT5G58290
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0432
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
| AT1G15200
| PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0157
| Unknown | PROTEIN-PROTEIN INTERACTION REGULATOR FAMILY PROTEIN |
| AT4G32660
| PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | AME3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G55090
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0784
| Unknown | CARBON-NITROGEN HYDROLASE FAMILY PROTEIN |
| AT1G71360
| PredictedAffinity Capture-MS | FSW = 0.0627
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN MITOCHONDRION CONTAINS INTERPRO DOMAIN/S SAD1/UNC-LIKE C-TERMINAL (INTERPROIPR012919) GALACTOSE-BINDING LIKE (INTERPROIPR008979) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G228821) HAS 9785 BLAST HITS TO 6992 PROTEINS IN 496 SPECIES ARCHAE - 108 BACTERIA - 691 METAZOA - 4011 FUNGI - 621 PLANTS - 261 VIRUSES - 70 OTHER EUKARYOTES - 4023 (SOURCE NCBI BLINK) |
| AT1G74310
| PredictedAffinity Capture-MS | FSW = 0.0452
| Unknown | ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT1G15420
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0231
| Unknown | UNKNOWN PROTEIN |
| AT1G52500
| PredictedSynthetic Lethality | FSW = 0.0265
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
| AT1G79990
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0208
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
| AT2G32415
| PredictedAffinity Capture-MS | FSW = 0.0187
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
| AT2G48100
| PredictedSynthetic Lethality | FSW = 0.0209
| Unknown | EXONUCLEASE FAMILY PROTEIN |
| AT3G13970
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0237
| Unknown | APG12B (AUTOPHAGY 12 B) |
| AT4G16265
| Predictedtwo hybrid | FSW = 0.0223
| Unknown | NRPB9B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
| AT4G27180
| PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0276
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
| AT5G19150
| PredictedSynthetic Rescue | FSW = 0.0069
| Unknown | CARBOHYDRATE KINASE FAMILY |
| AT5G26110
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0288
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN KINASE |
| AT5G37340
| Predictedinterologs mapping | FSW = 0.0575
| Unknown | ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN |
| AT5G62420
| PredictedAffinity Capture-Western | FSW = 0.0364
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT4G31870
| Predictedtwo hybrid | FSW = 0.0364
| Unknown | ATGPX7 (GLUTATHIONE PEROXIDASE 7) GLUTATHIONE PEROXIDASE |
| AT1G22882
| PredictedAffinity Capture-MS | FSW = 0.0627
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN MITOCHONDRION CONTAINS INTERPRO DOMAIN/S SAD1/UNC-LIKE C-TERMINAL (INTERPROIPR012919) GALACTOSE-BINDING LIKE (INTERPROIPR008979) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G713601) HAS 1862 BLAST HITS TO 1619 PROTEINS IN 245 SPECIES ARCHAE - 32 BACTERIA - 119 METAZOA - 736 FUNGI - 195 PLANTS - 90 VIRUSES - 21 OTHER EUKARYOTES - 669 (SOURCE NCBI BLINK) |
| AT1G54210
| PredictedAffinity Capture-MS | FSW = 0.0192
| Unknown | ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING |
| AT1G52360
| PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
| AT5G22480
| Predictedinterologs mapping | FSW = 0.0268
| Unknown | ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN |
| AT5G54670
| Predictedinteraction prediction | FSW = 0.0302
| Unknown | ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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